Mercurial > repos > rnateam > blockclust

diff tool_dependencies.xml @ 14:0fbc8cdc1cd0 draft

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Uploaded
author rnateam
date Wed, 22 Jan 2014 11:20:03 -0500
parents 69a7a16f26e4
children 6ee2478c4fdc
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line diff
--- a/tool_dependencies.xml	Mon Oct 28 11:26:22 2013 -0400
+++ b/tool_dependencies.xml	Wed Jan 22 11:20:03 2014 -0500
@@ -4,7 +4,13 @@
         <repository changeset_revision="54195f1d4b0f" name="package_samtools_0_1_19" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu" />
     </package>
     <package name="R_3_0_1" version="3.0.1">
-        <repository changeset_revision="e16e08f41ed7" name="package_r_3_0_1" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu" />
+        <repository changeset_revision="1d5b86c2e93d" name="package_r_3_0_1" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="eden" version="1.1">
+        <repository changeset_revision="25d3b2b5b677" name="package_eden_1_1" owner="bgruening" toolshed="http://testtoolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="mcl" version="12.135 ">
+        <repository changeset_revision="7003196be1b1" name="package_mcl_12_135" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu" />
     </package>
     <package name="blockclust_rlibs" version="1.0">
          <install version="1.0">
@@ -72,6 +78,12 @@
                 <action type="shell_command">tar xfvz panTro4.tar.gz -C $INSTALL_DIR/data/annotations/</action>
                 <action type="download_file">https://github.com/bgruening/download_store/raw/master/blockclust/blockclust-data-1.0/annotations/rheMac3.tar.gz</action>
                 <action type="shell_command">tar xfvz rheMac3.tar.gz -C $INSTALL_DIR/data/annotations/</action>
+                <action type="download_file">https://github.com/bgruening/download_store/raw/master/blockclust/blockclust-data-1.0/annotations/xenTro3.tar.gz</action>
+                <action type="shell_command">tar xfvz xenTro3.tar.gz -C $INSTALL_DIR/data/annotations/</action>
+                <action type="download_file">https://github.com/bgruening/download_store/raw/master/blockclust/blockclust-data-1.0/annotations/celWS235.tar.gz</action>
+                <action type="shell_command">tar xfvz celWS235.tar.gz -C $INSTALL_DIR/data/annotations/</action>
+                <action type="download_file">https://github.com/bgruening/download_store/raw/master/blockclust/blockclust-data-1.0/annotations/tair10.tar.gz</action>
+                <action type="shell_command">tar xfvz tair10.tar.gz -C $INSTALL_DIR/data/annotations/</action>
                 <action type="download_file">https://github.com/bgruening/download_store/raw/master/blockclust/blockclust-data-1.0/models.tar.gz</action>
                 <action type="shell_command">tar xfvz models.tar.gz -C $INSTALL_DIR/data/</action>
                 <action type="set_environment">