# HG changeset patch
# User rnateam
# Date 1445521971 14400
# Node ID 119fccb5959729bc176618aaaedf0cb391993cdc
Uploaded
diff -r 000000000000 -r 119fccb59597 convert_bc_to_binary_RY.xml
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/convert_bc_to_binary_RY.xml Thu Oct 22 09:52:51 2015 -0400
@@ -0,0 +1,39 @@
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+ Convert to binary barcodes.
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+ macros.xml
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+ python convert_bc_to_binary_RY.py --version
+ $default]]>
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diff -r 000000000000 -r 119fccb59597 coords2clnt.xml
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/coords2clnt.xml Thu Oct 22 09:52:51 2015 -0400
@@ -0,0 +1,45 @@
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+ Extract crosslinked nucleotide.
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+ macros.xml
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+ python coords2clnt.py --version
+ $default]]>
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diff -r 000000000000 -r 119fccb59597 extract_aln_ends.xml
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/extract_aln_ends.xml Thu Oct 22 09:52:51 2015 -0400
@@ -0,0 +1,52 @@
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diff -r 000000000000 -r 119fccb59597 extract_bcs.xml
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/extract_bcs.xml Thu Oct 22 09:52:51 2015 -0400
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diff -r 000000000000 -r 119fccb59597 macros.xml
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/macros.xml Thu Oct 22 09:52:51 2015 -0400
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+ bctools
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+ 10.1016/j.molcel.2013.07.001
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diff -r 000000000000 -r 119fccb59597 merge_pcr_duplicates.xml
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/merge_pcr_duplicates.xml Thu Oct 22 09:52:51 2015 -0400
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+ macros.xml
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+ python merge_pcr_duplicates.py --version
+ $default]]>
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diff -r 000000000000 -r 119fccb59597 remove_tail.xml
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/remove_tail.xml Thu Oct 22 09:52:51 2015 -0400
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+ Remove nts from 3'-end.
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+ macros.xml
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+ python remove_tail.py --version
+ $default]]>
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diff -r 000000000000 -r 119fccb59597 rm_spurious_events.xml
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/rm_spurious_events.xml Thu Oct 22 09:52:51 2015 -0400
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+ Remove spurious events.
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+ macros.xml
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+ python rm_spurious_events.py --version
+ $default]]>
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diff -r 000000000000 -r 119fccb59597 tool_dependencies.xml
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml Thu Oct 22 09:52:51 2015 -0400
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+ https://github.com/tzk/bctools/archive/v0.1.0-alpha1.tar.gz
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+ python setup.py install --install-scripts $INSTALL_DIR
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+ $INSTALL_DIR
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+bctools - Set of tools for handling barcodes in NGS data.
+https://github.com/tzk/bctools
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