# HG changeset patch # User rnateam # Date 1445521971 14400 # Node ID 119fccb5959729bc176618aaaedf0cb391993cdc Uploaded diff -r 000000000000 -r 119fccb59597 convert_bc_to_binary_RY.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/convert_bc_to_binary_RY.xml Thu Oct 22 09:52:51 2015 -0400 @@ -0,0 +1,39 @@ + + Convert to binary barcodes. + + macros.xml + + + + python convert_bc_to_binary_RY.py --version + $default]]> + + + + + + + + + + + + + + diff -r 000000000000 -r 119fccb59597 coords2clnt.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/coords2clnt.xml Thu Oct 22 09:52:51 2015 -0400 @@ -0,0 +1,45 @@ + + Extract crosslinked nucleotide. + + macros.xml + + + + + + + python coords2clnt.py --version + $default]]> + + + + + + + + + + + + + + diff -r 000000000000 -r 119fccb59597 extract_aln_ends.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/extract_aln_ends.xml Thu Oct 22 09:52:51 2015 -0400 @@ -0,0 +1,52 @@ + + Extract alignment ends from sam file. + + macros.xml + + + + python extract_aln_ends.py --version + $default]]> + + + + + + + + + + + + + + diff -r 000000000000 -r 119fccb59597 extract_bcs.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/extract_bcs.xml Thu Oct 22 09:52:51 2015 -0400 @@ -0,0 +1,44 @@ + + Extract barcodes using pattern. + + macros.xml + + + + python extract_bcs.py --version + $default]]> + + + + + + + + + + + + + + + + diff -r 000000000000 -r 119fccb59597 macros.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/macros.xml Thu Oct 22 09:52:51 2015 -0400 @@ -0,0 +1,17 @@ + + + + bctools + + + + + + + + + + 10.1016/j.molcel.2013.07.001 + + + diff -r 000000000000 -r 119fccb59597 merge_pcr_duplicates.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/merge_pcr_duplicates.xml Thu Oct 22 09:52:51 2015 -0400 @@ -0,0 +1,53 @@ + + + + + macros.xml + + + + python merge_pcr_duplicates.py --version + $default]]> + + + + + + + + + + + + + + + + diff -r 000000000000 -r 119fccb59597 remove_tail.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/remove_tail.xml Thu Oct 22 09:52:51 2015 -0400 @@ -0,0 +1,43 @@ + + Remove nts from 3'-end. + + macros.xml + + + + python remove_tail.py --version + $default]]> + + + + + + + + + + + + + + + + diff -r 000000000000 -r 119fccb59597 rm_spurious_events.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/rm_spurious_events.xml Thu Oct 22 09:52:51 2015 -0400 @@ -0,0 +1,54 @@ + + Remove spurious events. + + macros.xml + + + + python rm_spurious_events.py --version + $default]]> + + + + + + + + + + + + + + + + diff -r 000000000000 -r 119fccb59597 tool_dependencies.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_dependencies.xml Thu Oct 22 09:52:51 2015 -0400 @@ -0,0 +1,39 @@ + + + + + + + https://github.com/tzk/bctools/archive/v0.1.0-alpha1.tar.gz + + + + + + + + + + + + + + + python setup.py install --install-scripts $INSTALL_DIR + + + $INSTALL_DIR + + + + + +bctools - Set of tools for handling barcodes in NGS data. +https://github.com/tzk/bctools + + +