view convert_bc_to_binary_RY.xml @ 5:e841de88235c draft

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<tool id="convert_bc_to_binary_RY.py" name="convert_bc_to_binary_RY.py" version="0.1.0">
  <description>Convert to binary barcodes.</description>
  <macros>
    <import>macros.xml</import>
  </macros>
  <expand macro="requirements" />
  <expand macro="stdio" />
  <version_command>python convert_bc_to_binary_RY.py --version</version_command>
  <command interpreter="python"><![CDATA[
convert_bc_to_binary_RY.py
#if $positional_1 and $positional_1 is not None:
$positional_1
#end if
> $default]]></command>
  <inputs>
    <param label="Fasta file to convert." name="positional_1" type="data" format="fasta"/>
  </inputs>
  <outputs>
    <data hidden="false" name="default" format="fasta"/>
  </outputs>
  <tests>
    <test>
      <param name="positional_1" value="result.fa"/>
      <output name="default" file="converted_bcs.fa"/>
    </test>
  </tests>
  <help><![CDATA[
Convert standard nucleotides to IUPAC nucleotide codes used for binary barcodes.

A and G are converted to nucleotide code R. T, U and C are converted to Y.

Author: Daniel Maticzka
Copyright: 2015
License: Apache
Email: [e-mail]
Status: Testing
]]></help>
  <expand macro="citations" />
</tool>