diff tool_dependencies.xml @ 58:bbbae1ee87e0 draft default tip

fix for flexbar with small data issue

--- a/tool_dependencies.xml	Mon Feb 15 07:32:50 2016 -0500
+++ b/tool_dependencies.xml	Tue Feb 16 10:08:58 2016 -0500
@@ -6,12 +6,12 @@
     <!-- <package name="biopython" version="1.65">
         <repository name="package_biopython_1_65" owner="biopython"/>
     </package> -->
-    <!-- <package name="pybedtools" version="0.7.4">
-        <repository name="package_python_2_7_pybedtools_0_7_4" owner="iuc"/>
+    <package name="pybedtools" version="0.7.4">
+        <repository changeset_revision="c763d117e75a" name="package_python_2_7_pybedtools_0_7_4" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    </package>
+    <!-- <package name="pybedtools" version="0.6.9">
+        <repository name="package_python_2_7_pybedtools_0_6_9" owner="iuc"/>
     </package> -->
-    <package name="pybedtools" version="0.6.9">
-        <repository changeset_revision="c4641c3a869f" name="package_python_2_7_pybedtools_0_6_9" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-    </package>
     <package name="pysam" version="0.8.3">
         <repository changeset_revision="7ac80143c68d" name="package_python_2_7_pysam_0_8_3" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
     </package>
@@ -30,5 +30,8 @@
     <package name="datamash" version="1.0.6">
         <repository changeset_revision="df06a5e1ed6f" name="package_datamash_1_0_6" owner="agordon" toolshed="https://testtoolshed.g2.bx.psu.edu" />
     </package>
+    <package name="bedtools" version="2.24">
+        <repository changeset_revision="e6f4a7398a47" name="package_bedtools_2_24" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    </package>
 
 </tool_dependency>