Mercurial > repos > rnateam > bctools
diff flexbar_split_RR_bcs.xml @ 58:bbbae1ee87e0 draft default tip
fix for flexbar with small data issue
author | rnateam |
---|---|
date | Tue, 16 Feb 2016 10:08:58 -0500 |
parents | 25ebec14969a |
children |
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--- a/flexbar_split_RR_bcs.xml Mon Feb 15 07:32:50 2016 -0500 +++ b/flexbar_split_RR_bcs.xml Tue Feb 16 10:08:58 2016 -0500 @@ -14,7 +14,7 @@ <version_command>flexbar --version</version_command> - <command> + <command><![CDATA[ flexbar @@ -49,14 +49,16 @@ --max-uncalled $maxUncalled --min-read-length $minReadLen - > $output; + > $output - mv flexbar_barcode_repA_1.fastq $output_repA_1; - mv flexbar_barcode_repA_2.fastq $output_repA_2; - mv flexbar_barcode_repB_1.fastq $output_repB_1; - mv flexbar_barcode_repB_2.fastq $output_repB_2; + && mv flexbar_barcode_repA_1.fastq $output_repA_1 + && mv flexbar_barcode_repA_2.fastq $output_repA_2 + && mv flexbar_barcode_repB_1.fastq $output_repB_1 + && mv flexbar_barcode_repB_2.fastq $output_repB_2 - </command> + && sleep 20 + + ]]></command> <inputs>