Mercurial > repos > rnateam > bctools

diff flexbar_no_split.xml @ 58:bbbae1ee87e0 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
fix for flexbar with small data issue
author rnateam
date Tue, 16 Feb 2016 10:08:58 -0500
parents 55b539a509f0
children
line wrap: on
line diff
--- a/flexbar_no_split.xml	Mon Feb 15 07:32:50 2016 -0500
+++ b/flexbar_no_split.xml	Tue Feb 16 10:08:58 2016 -0500
@@ -16,7 +16,7 @@
 
     <version_command>flexbar --version</version_command>
 
-    <command>
+    <command><![CDATA[
 
         flexbar
 
@@ -102,12 +102,12 @@
             $cLogging.rndTags
         #end if
 
-        > $output;
+        && mv flexbar_1.fastq $output_1
+        && mv flexbar_2.fastq $output_2
 
-        mv flexbar_1.fastq $output_1;
-        mv flexbar_2.fastq $output_2;
+        && sleep 20
 
-    </command>
+    ]]></command>
 
 
     <inputs>