Mercurial > repos > rnateam > bctools
diff merge_pcr_duplicates.xml @ 6:1bfc5a5de843 draft
Uploaded
| author | rnateam |
|---|---|
| date | Wed, 04 Nov 2015 07:18:06 -0500 |
| parents | bf5b606f1aa7 |
| children | 17ef0e0dae68 |
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--- a/merge_pcr_duplicates.xml Fri Oct 23 07:28:06 2015 -0400 +++ b/merge_pcr_duplicates.xml Wed Nov 04 07:18:06 2015 -0500 @@ -1,5 +1,5 @@ -<tool id="merge_pcr_duplicates.py" name="merge_pcr_duplicates.py" version="0.1.0"> - <description>Merge PCR duplicates according to random barcode library.</description> +<tool id="merge_pcr_duplicates.py" name="Merge PCR duplicates" version="0.1.0"> + <description>according to random barcode library.</description> <macros> <import>macros.xml</import> </macros> @@ -35,11 +35,13 @@ Barcodes containing uncalled base 'N' are removed. -Input: +Input:: + * bed6 file containing alignments with fastq read-id in name field * fasta library with fastq read-id as sequence ids -Output: +Output:: + * bed6 file with random barcode in name field and number of PCR duplicates as score, sorted by fields chrom, start, stop, strand, name Author: Daniel Maticzka