Mercurial > repos > rnateam > bctools
diff convert_bc_to_binary_RY.xml @ 0:119fccb59597 draft
Uploaded
| author | rnateam |
|---|---|
| date | Thu, 22 Oct 2015 09:52:51 -0400 |
| parents | |
| children | 1bfc5a5de843 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/convert_bc_to_binary_RY.xml Thu Oct 22 09:52:51 2015 -0400 @@ -0,0 +1,39 @@ +<tool id="convert_bc_to_binary_RY.py" name="convert_bc_to_binary_RY.py" version="0.1.0"> + <description>Convert to binary barcodes.</description> + <macros> + <import>macros.xml</import> + </macros> + <expand macro="requirements" /> + <expand macro="stdio" /> + <version_command>python convert_bc_to_binary_RY.py --version</version_command> + <command interpreter="python"><![CDATA[ +convert_bc_to_binary_RY.py +#if $positional_1 and $positional_1 is not None: +$positional_1 +#end if +> $default]]></command> + <inputs> + <param label="Fasta file to convert." name="positional_1" type="data" format="fasta"/> + </inputs> + <outputs> + <data hidden="false" name="default" format="fasta"/> + </outputs> + <tests> + <test> + <param name="positional_1" value="result.fa"/> + <output name="default" file="converted_bcs.fa"/> + </test> + </tests> + <help><![CDATA[ +Convert standard nucleotides to IUPAC nucleotide codes used for binary barcodes. + +A and G are converted to nucleotide code R. T, U and C are converted to Y. + +Author: Daniel Maticzka +Copyright: 2015 +License: Apache +Email: maticzkd@informatik.uni-freiburg.de +Status: Testing +]]></help> + <expand macro="citations" /> +</tool>