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6
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1 <tool id="remove_tail.py" name="Remove 3'-end nts" version="0.1.0">
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2 <description>from FASTQ</description>
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56
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3 <requirements>
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4 <requirement type="package" version="1.66">biopython</requirement>
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5 </requirements>
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0
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6 <macros>
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7 <import>macros.xml</import>
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8 </macros>
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9 <expand macro="stdio" />
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50
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10 <version_command>python $__tool_directory__/remove_tail.py --version</version_command>
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0
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11 <command interpreter="python"><![CDATA[remove_tail.py
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12 #if $positional_1 and $positional_1 is not None:
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13 $positional_1
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14 #end if
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15
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16 #if $positional_2 and $positional_2 is not None:
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17 $positional_2
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18 #end if
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19
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20 > $default]]></command>
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21 <inputs>
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22 <param area="false" label="Fastq file." name="positional_1" type="data" format="fastq"/>
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23 <param label="Remove this many nts." name="positional_2" type="integer" value="0"/>
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24 </inputs>
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25 <outputs>
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26 <data format="fastq" hidden="false" name="default"/>
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27 </outputs>
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28 <tests>
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29 <test>
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30 <param name="positional_1" value="readswithtail.fastq"/>
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31 <param name="positional_2" value="7"/>
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32 <output name="default" file="readswithtailremoved.fastq"/>
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33 </test>
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34 </tests>
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35 <help><![CDATA[
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36 Remove a certain number of nucleotides from the 3'-tails of sequences in fastq format.
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37
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38 Author: Daniel Maticzka
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39 Copyright: 2015
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40 License: Apache
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41 Email: maticzkd@informatik.uni-freiburg.de
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42 Status: Testing
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43 ]]></help>
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44 <expand macro="citations" />
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45 </tool>
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