Mercurial > repos > rnateam > antarna

changeset 14:080fbbf502d8 draft

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/antarna/ commit b9de12219a5d06be282f8c3fd9e80369a2b72825-dirty
author rnateam
date Tue, 12 May 2015 12:38:10 -0400
parents 7e501b8183bf
children 1dce5abbab59
files antarna.xml
diffstat 1 files changed, 9 insertions(+), 5 deletions(-) [+]
line wrap: on
line diff
--- a/antarna.xml	Tue May 12 11:34:15 2015 -0400
+++ b/antarna.xml	Tue May 12 12:38:10 2015 -0400
@@ -150,14 +150,16 @@
   </outputs>
   <tests>
     <test>
-      <param name="Cstr" value="...((..((...)))..)." />
+      <param name="Cstr" value="((..(..((...)))..))" />
       <param name="tGC" value="0.5" />
       <param name="n" value="1" />
       <output name="default">
         <assert_contents>
-          <has_line_matching_expression="[ACGU]{19}"/>
+          <has_text_matching expression="[ACGU]{19}"/>
         </assert_contents>
       </output>
+    </test>
+  </tests>
   <help><![CDATA[   
 .
 
@@ -173,11 +175,13 @@
 - For questions and remarks please feel free to contact us at http://www.bioinf.uni-freiburg.de/
 
 Example parameters:
--	--Cstr "...(((...)))..." --tGC 0.5 -n 2
--	--Cstr ".........AAA(((...)))AAA........." --tGC 0.5 -n 10 --output_file /path/to/antaRNA_TESTRUN -ov
--	--Cstr "BBBBB....AAA(((...)))AAA....BBBBB" --Cseq "NNNNANNNNNCNNNNNNNNNNNGNNNNNNUNNN" --tGC 0.5 -n 10
+    - --Cstr "...(((...)))..." --tGC 0.5 -n 2
+    - --Cstr ".........AAA(((...)))AAA........." --tGC 0.5 -n 10 --output_file /path/to/antaRNA_TESTRUN -ov
+    - --Cstr "BBBBB....AAA(((...)))AAA....BBBBB" --Cseq "NNNNANNNNNCNNNNNNNNNNNGNNNNNNUNNN" --tGC 0.5 -n 10
 
 
 		]]></help>
+  <citations>
+  </citations>
 </tool>