Mercurial > repos > rlegendre > ribo_tools
diff get_codon_frequency.xml @ 13:7c944fd9907e draft
release 2
| author | rlegendre |
|---|---|
| date | Thu, 09 Apr 2015 11:35:48 -0400 |
| parents | 313b8f7d2a92 |
| children | 344bacf6acb8 |
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--- a/get_codon_frequency.xml Fri Jan 23 03:31:37 2015 -0500 +++ b/get_codon_frequency.xml Thu Apr 09 11:35:48 2015 -0400 @@ -1,5 +1,5 @@ <tool id="Codon_analysis" name="Codon_density"> - <description>To compare Ribo-seq alignments between two sets of conditions, to determine codon occupancy </description> + <description>To compare Ribo-seq alignments between two sets of conditions, to determine codon occupancy</description> <requirements> <requirement type="package">samtools</requirement> <requirement type="python-module">matplotlib</requirement> @@ -57,8 +57,8 @@ </param> <param name="asite" type="integer" label="Off-set from the 5'end of the footprint to the A-site" value ="15" /> <param name="kmer" type="integer" label="Lenght of the best phasing footprints" value ="28" /> - <param name="cond1" type="text" size="25" label="Condition one" help="Required even if no replicate" /> - <param name="cond2" type="text" size="25" label="Condition two" help="Required even if no replicate" /> + <param name="cond1" type="text" size="25" label="Condition one" help="Required even if no replicate" value="cond1"/> + <param name="cond2" type="text" size="25" label="Condition two" help="Required even if no replicate" value="cond2"/> <param name="color1" type="text" size="50" label="Color for first condition" value ="SkyBlue" help="Enter standard name, hex color string, or rgb code. You cand find all colors here : http://pythonhosted.org/ete2/reference/reference_svgcolors.html" /> <param name="color2" type="text" size="50" label="Color for second condition" value ="Plum" help="Enter standard name, hex color string, or rgb code. You cand find all colors here : http://pythonhosted.org/ete2/reference/reference_svgcolors.html" />