Mercurial > repos > rlegendre > ribo_tools

diff get_codon_frequency.py @ 14:344bacf6acb8 draft

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author rlegendre
date Fri, 10 Apr 2015 03:18:56 -0400
parents 7c944fd9907e
children 702e60e819c2
line wrap: on
line diff
--- a/get_codon_frequency.py	Thu Apr 09 11:35:48 2015 -0400
+++ b/get_codon_frequency.py	Fri Apr 10 03:18:56 2015 -0400
@@ -94,7 +94,7 @@
                         continue
                     len_read = len(read.split('\t')[9])        
                     # if it's read of good length
-                    if len_read == kmer and (tag in line or multi_tag not in line):
+                    if len_read == kmer and (tag in read or multi_tag not in read):
                         feat = read.split('\t')
                         seq = feat[9]
                         # if it's a reverse read