diff kmer_analysis.xml @ 11:313b8f7d2a92

(none)

--- a/kmer_analysis.xml	Thu Jan 22 14:34:38 2015 +0100
+++ b/kmer_analysis.xml	Thu Jan 22 14:34:53 2015 +0100
@@ -1,5 +1,5 @@
 <tool id="kmer_analysis" name="Kmer">
-	<description>Compute proportion of each kmer and phasing</description>
+	<description>To calculate the proportion and phasing of each kmer</description>
 	<requirements>
 		<requirement type="package">samtools</requirement>
 	    <requirement type="package">numpy</requirement>
@@ -12,7 +12,7 @@
 	</command>
 
 	<inputs>
-		<param name="gff" type="data" label="References Input Annotation File (gff)" format="gff" />
+		<param name="gff" type="data" label="Reference annotation file (GFF))" format="gff" />
 		<param name="bamfile" type="data" label="Bam file" format="bam" />
 	</inputs>
 
@@ -25,11 +25,11 @@
 	
 Summary
 -------
-This tool uses Ribo-seq data (bam file) to compute proportion of each kmer (lenght of footprints) and phasing. 
+The kmer tool computes the distribution of footprints length from Bam file and determines the proportion of footprints beginning in each frame, for all annotated genes in the GFF file.
 		
 Output 
 ------- 
-This tool provides an html report with all kmer proportion and phasing. 
+This tool provides an html report detailing the proportions and phasing of the kmers. 
 
 
 Dependances