Mercurial > repos > rlegendre > ribo_tools
comparison metagene_readthrough.py @ 17:c87c40e642af draft
Uploaded
| author | rlegendre |
|---|---|
| date | Fri, 29 May 2015 09:17:29 -0400 |
| parents | 702e60e819c2 |
| children | 385fc64fa988 |
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| 16:fcfdb2607cb8 | 17:c87c40e642af |
|---|---|
| 943 (options, args) = parser.parse_args() | 943 (options, args) = parser.parse_args() |
| 944 sys.stdout.write("Begin readthrough analysis at %s\n" % time.asctime( time.localtime(time.time()))) | 944 sys.stdout.write("Begin readthrough analysis at %s\n" % time.asctime( time.localtime(time.time()))) |
| 945 | 945 |
| 946 try: | 946 try: |
| 947 (html_file, subfolder ) = options.dirout.split(",") | 947 (html_file, subfolder ) = options.dirout.split(",") |
| 948 if os.path.exists(subfolder): | 948 if not os.path.exists(subfolder): |
| 949 raise | 949 try: |
| 950 try: | 950 os.mkdir(subfolder) |
| 951 os.mkdir(subfolder) | 951 except Exception, e : |
| 952 except: | 952 stop_err('Error running make directory : ' + str(e)) |
| 953 raise | |
| 954 ## identify GFF or GTF format from 9th column | 953 ## identify GFF or GTF format from 9th column |
| 955 with open (options.gff,"r") as gffile : | 954 with open (options.gff,"r") as gffile : |
| 956 for line in gffile : | 955 for line in gffile : |
| 957 if '#' in line : | 956 if '#' in line : |
| 958 ## skip header | 957 ## skip header |