Mercurial > repos > rjmw > dimspy_process_scans

diff macros.xml @ 1:769165c75514 draft default tip

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planemo upload for repository https://github.com/computational-metabolomics/dimspy-galaxy commit 42331bc61ea07d75f88007e5a2c65eaf9e811f06
author rjmw
date Wed, 30 May 2018 09:20:20 -0400
parents d129e75a31d9
children
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line diff
--- a/macros.xml	Tue Feb 27 14:04:01 2018 -0500
+++ b/macros.xml	Wed May 30 09:20:20 2018 -0400
@@ -1,19 +1,14 @@
 <macros>
     <xml name="requirements">
         <requirements>
-            <requirement type="package" version="1.1.0">dimspy</requirement>
+            <requirement type="package" version="1.2.0">dimspy</requirement>
         </requirements>
     </xml>
-    <xml name="stdio">
-        <stdio>
-            <exit_code range="1:" />
-        </stdio>
-    </xml>
     
     <token name="@HDF5_PM_TO_TXT@">
         dimspy hdf5-pm-to-txt
-        --input "$hdf5_file_out"
-        --output "$matrix_file_out"
+        --input '$hdf5_file_out'
+        --output '$matrix_file_out'
         --delimiter $delimiter
         --attribute_name $hdf5_to_txt.matrix_attr
         --representation-samples $hdf5_to_txt.representation_samples
@@ -21,8 +16,8 @@
 
     <token name="@HDF5_PM_TO_TXT_COMPREHENSIVE@">
         dimspy hdf5-pm-to-txt
-        --input "$hdf5_file_out"
-        --output "$matrix_comprehensive_file_out"
+        --input '$hdf5_file_out'
+        --output '$matrix_comprehensive_file_out'
         --delimiter $delimiter
         --comprehensive
         --attribute_name $hdf5_to_txt.matrix_attr