# HG changeset patch
# User rjmw
# Date 1527686343 14400
# Node ID 79fdd9fc8ebaa4f803ab06498445195abea1b23c
# Parent  62bcdba9ddcc62277e73e9869d2103d38fec1d52
planemo upload for repository https://github.com/computational-metabolomics/dimspy-galaxy commit 42331bc61ea07d75f88007e5a2c65eaf9e811f06

diff -r 62bcdba9ddcc -r 79fdd9fc8eba blank_filter.xml
--- a/blank_filter.xml	Tue Feb 27 14:03:10 2018 -0500
+++ b/blank_filter.xml	Wed May 30 09:19:03 2018 -0400
@@ -4,11 +4,11 @@
         <import>macros.xml</import>
     </macros>
     <expand macro="requirements" />
-    <expand macro="stdio" />
-    <command><![CDATA[
+    <command detect_errors="exit_code">
+    <![CDATA[
         dimspy blank-filter
-        --input "$hdf5_file_in"
-        --output "$hdf5_file_out"
+        --input '$hdf5_file_in'
+        --output '$hdf5_file_out'
         --blank-label $blank_label
         --min-fraction $min_fraction
         --function $function
@@ -17,8 +17,8 @@
             $remove_blank_samples
             &&
             dimspy create-sample-list
-            --input "$hdf5_file_out"
-            --output "$samplelist"
+            --input '$hdf5_file_out'
+            --output '$samplelist'
             --delimiter tab
         #end if
         #if $hdf5_to_txt.standard
@@ -29,7 +29,8 @@
             &&
             @HDF5_PM_TO_TXT_COMPREHENSIVE@
         #end if
-    ]]></command>
+    ]]>
+    </command>
     <inputs>
         <param name="hdf5_file_in" type="data" format="h5" label="Peak Intensity Matrix (HDF5 file)" help="" argument="--input"/>
         <param name="blank_label" type="text" value="blank" label="Label for the blank samples" argument="--blank-label">
@@ -48,7 +49,7 @@
     </inputs>
     <outputs>
         <expand macro="outputs_peak_intensity_matrix" />
-        <data name="samplelist" format="tsv" label="${tool.name} on ${on_string}: Sample Metadata (updated)"  >
+        <data name="samplelist" format="tsv" label="${tool.name} on ${on_string}: Sample Metadata (updated)" >
             <filter>str($remove_blank_samples) == "--remove-blank-samples"</filter>
         </data>
     </outputs>
diff -r 62bcdba9ddcc -r 79fdd9fc8eba macros.xml
--- a/macros.xml	Tue Feb 27 14:03:10 2018 -0500
+++ b/macros.xml	Wed May 30 09:19:03 2018 -0400
@@ -1,19 +1,14 @@
 <macros>
     <xml name="requirements">
         <requirements>
-            <requirement type="package" version="1.1.0">dimspy</requirement>
+            <requirement type="package" version="1.2.0">dimspy</requirement>
         </requirements>
     </xml>
-    <xml name="stdio">
-        <stdio>
-            <exit_code range="1:" />
-        </stdio>
-    </xml>
     
     <token name="@HDF5_PM_TO_TXT@">
         dimspy hdf5-pm-to-txt
-        --input "$hdf5_file_out"
-        --output "$matrix_file_out"
+        --input '$hdf5_file_out'
+        --output '$matrix_file_out'
         --delimiter $delimiter
         --attribute_name $hdf5_to_txt.matrix_attr
         --representation-samples $hdf5_to_txt.representation_samples
@@ -21,8 +16,8 @@
 
     <token name="@HDF5_PM_TO_TXT_COMPREHENSIVE@">
         dimspy hdf5-pm-to-txt
-        --input "$hdf5_file_out"
-        --output "$matrix_comprehensive_file_out"
+        --input '$hdf5_file_out'
+        --output '$matrix_comprehensive_file_out'
         --delimiter $delimiter
         --comprehensive
         --attribute_name $hdf5_to_txt.matrix_attr
diff -r 62bcdba9ddcc -r 79fdd9fc8eba test-data/merged_01.h5
Binary file test-data/merged_01.h5 has changed
diff -r 62bcdba9ddcc -r 79fdd9fc8eba test-data/merged_02.h5
Binary file test-data/merged_02.h5 has changed
diff -r 62bcdba9ddcc -r 79fdd9fc8eba test-data/peak_matrix_as.txt
--- a/test-data/peak_matrix_as.txt	Tue Feb 27 14:03:10 2018 -0500
+++ b/test-data/peak_matrix_as.txt	Wed May 30 09:19:03 2018 -0400
@@ -1,4 +1,4 @@
-mz	95.0854867136	96.0477230462	97.0647529114	97.1011384065	98.9954998691	99.0804011767	101.003118017	101.059284262	101.059667337	101.777300408	101.781524007	102.127686063	102.970223555	103.038951206	103.075318834	104.106972509	105.003234195	105.090964311	107.070230246	107.085062328	107.085488315	109.100703053	109.101137314	111.08040236	111.116786045	112.052301283	113.059666808	113.096051485	114.065677969	114.066170487	114.091302909	115.036557299	115.075318293	115.111705216	116.070599012	116.985382141	116.98587154	117.054583395	117.090968646	118.086253653	119.085485311	120.980267261	120.980786531	121.00756219	121.064754009	123.013845316	123.055288913	123.116788199	125.095487802	125.096051948	126.021940468	127.075321735	127.111706998	128.010843476	128.994858336	129.090369007	129.090974735	129.127358602	130.049222294	130.049863468	130.964513436	130.965138358	131.009836808	131.010517825	131.018942036	131.070233883	131.085482301	131.106615399	132.074583988	132.075008963	132.075567318	132.076101717	132.076671348	132.077202011	132.077992635	132.078371418	132.10124611	132.101899697	133.034572295	133.073124466	133.073801709	133.078935658	133.079460494	133.080118687	133.080632528	133.085244134	133.08588551	133.100506766	133.101138251	133.105278546	134.080996946	134.986830233	134.996465421	135.002862414	135.044024062	135.079258734	135.079764229	135.08038938	135.08097732	135.100884718	135.101532646	135.116137118	135.116787748	136.021508699	136.04691347	136.047429382	136.048119883	136.048697166	136.061765976	136.073251744	136.083096309	136.083761924	136.940051855	137.029491761	137.045065286	137.045773739	137.056596193	137.057269511	137.058997556	137.059672042	137.094876372	137.095391733	137.096043901	137.096633067	137.132444496	138.091309182	138.099413241	139.015603989	139.036530811	139.072917036	139.074630285	139.075322774	139.111014214	139.111701664	140.066921905	140.067478979	140.06819156	140.068751041	140.106954463	140.115061283	141.015855767	141.05218138	141.071577375	141.087852717	141.088567109	141.090252262	141.090971445	141.127355825	142.047430796	142.086228559	142.121881522	142.122604088	142.158992032	142.94808538	143.001525805	143.085493568	143.10588682	143.106624835	143.988083681	144.080733504	144.101942195	144.980789437	145.047092142	145.101135997	145.122261684	146.116764318	146.117593543	146.165212548	146.99644084	147.075026099	147.07563403	147.076381496	147.076979975	147.080407767	147.112840746	147.116791771	148.002470297	148.003082516	148.003895413	148.004529246	148.059020674	148.059628878	148.060463029	148.061104039	148.079812778	149.002478676	149.022503043	149.023281113	149.044827912	149.059672206	149.063819045	149.09606266	149.132443185	149.999720327	150.975955392	150.976840465	152.022107353	152.106952838	155.106635915	156.041293988	156.04209741	156.076741027	156.989754618	157.045485596	158.040247352	158.117532287	158.921989272	159.027720801	159.065165762	160.133198751	161.128432541	162.110690219	162.111590644	162.112377858	162.113089295	163.045136563	163.114854206	163.115822095	163.148118188	163.976056014	163.976865689	163.977780102	165.97362311	165.975937112	166.086251818	166.950728597	167.021727034	167.104235181	168.00575923	169.058369029	169.122302355	170.031627109	170.032608751	170.117542392	171.036000371	171.10155643	172.03075001	172.131391412	172.132189987	172.133058362	172.984687975	173.080840757	173.132465407	173.136536346	174.112454069	174.89594473	175.001680018	175.118963541	175.148114856	176.102979229	177.134608611	179.128465135	180.099485034	181.064781256	183.135542334	184.09440398	186.1488452	187.125928194	188.126027407	188.126982017	188.127958364	189.052399827	189.112130373	189.131443965	189.159733638	191.040098978	191.104244442	191.106642836	191.139020145	191.143026735	191.164168196	193.001987153	193.107326275	193.122293797	193.158657464	194.112909063	194.113937225	194.115013807	194.162041956	195.017597191	195.099164614	195.118489509	195.122688638	195.137953706	195.174329384	196.093111731	196.094365648	196.133188662	196.954419421	197.078436232	197.151198232	197.15359074	198.084934735	198.11005386	198.148826946	198.185230589	199.094085221	199.130443878	199.13285878	199.167928041	199.169182065	199.20565281	200.067015416	200.068336832	200.128114646	200.163168249	200.164421525	200.172596426	200.200872992	201.071723083	201.112137504	201.148516239	201.167861307	201.18489544	201.932346714	201.933718688	202.066511789	202.143739474	202.180178742	203.040079527	203.051224356	203.052583123	203.139034837	203.931844481	204.04214677	204.056007584	204.120741567	204.121476777	204.122881675	204.123967408	205.055741463	205.08591946	205.097182566	205.122293634	205.124995123	205.126369088	205.154711374	205.158691684	205.195062356	206.05531063	206.1273128	207.014274578	207.078225213	207.101570295	207.137952093	207.159083317	207.174339207	207.988550264	207.998291404	208.09441105	208.130805683	208.169561137	209.117232919	209.153584829	209.172945534	209.177406022	209.189980267	210.087340882	210.089121447	210.1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\ No newline at end of file
diff -r 62bcdba9ddcc -r 79fdd9fc8eba test-data/peak_matrix_as_bf.txt
--- a/test-data/peak_matrix_as_bf.txt	Tue Feb 27 14:03:10 2018 -0500
+++ b/test-data/peak_matrix_as_bf.txt	Wed May 30 09:19:03 2018 -0400
@@ -1,4 +1,4 @@
-mz	98.9954998691	101.777300408	101.781524007	103.038951206	104.106972509	112.052301283	115.036557299	116.070599012	118.086253653	123.013845316	123.055288913	126.021940468	128.010843476	128.994858336	130.049222294	131.009836808	131.010517825	131.018942036	132.074583988	132.075008963	132.075567318	132.076101717	132.076671348	132.077202011	132.077992635	132.078371418	132.10124611	132.101899697	133.073124466	133.073801709	133.078935658	133.079460494	133.080118687	133.080632528	133.105278546	134.080996946	135.002862414	136.04691347	136.047429382	136.048119883	136.048697166	136.061765976	136.940051855	137.029491761	137.045065286	137.045773739	139.015603989	140.066921905	140.067478979	140.06819156	140.068751041	141.015855767	141.071577375	142.94808538	143.988083681	144.101942195	146.116764318	146.117593543	146.165212548	147.075026099	147.07563403	147.076381496	147.076979975	147.112840746	148.002470297	148.003082516	148.003895413	148.004529246	148.059020674	148.059628878	148.060463029	148.061104039	148.079812778	149.063819045	149.999720327	150.975955392	150.976840465	152.022107353	156.041293988	156.04209741	156.076741027	156.989754618	157.045485596	158.040247352	158.921989272	159.027720801	160.133198751	161.128432541	162.110690219	162.111590644	162.112377858	162.113089295	163.045136563	163.114854206	163.115822095	163.976056014	163.976865689	163.977780102	165.97362311	165.975937112	166.086251818	166.950728597	167.021727034	168.00575923	169.058369029	170.031627109	170.032608751	171.036000371	172.03075001	172.984687975	173.080840757	174.89594473	175.001680018	175.118963541	176.102979229	177.134608611	179.128465135	187.125928194	189.052399827	191.040098978	193.001987153	198.084934735	200.067015416	200.068336832	201.071723083	201.932346714	201.933718688	202.066511789	202.180178742	203.040079527	203.051224356	203.052583123	203.931844481	204.04214677	204.056007584	204.120741567	204.121476777	204.122881675	204.123967408	205.055741463	205.097182566	205.124995123	205.126369088	205.154711374	206.05531063	206.1273128	207.014274578	207.078225213	207.988550264	207.998291404	210.087340882	210.089121447	210.940588306	210.985281317	214.058850666	215.069634252	218.137147136	218.138617868	218.18633146	219.017655316	219.026587805	219.142081286	222.029254451	222.988227171	226.104758587	227.113639423	229.152780695	229.154420238	230.157792453	231.144938826	232.151182802	232.152363977	232.154032856	232.155655558	233.157441453	235.066006489	236.992211984	238.022752298	241.129235983	241.154393751	242.078631865	242.115014467	245.13541974	245.147333125	245.149278063	246.152668181	246.169719791	246.180951474	248.146977998	248.148957043	249.045257364	249.153279612	249.155411959	249.157303366	250.158796263	253.094618769	254.018746292	255.13541146	257.041913238	257.091126293	258.109821983	260.185330942	260.196578012	261.188683931	262.128218019	262.164606458	263.145935141	264.172129098	266.187766715	267.11025096	269.087730151	270.109886656	271.137356381	273.005664599	276.180208183	280.091705372	292.203326231	293.071380726	293.206676616	296.06590552	298.992809793	302.242399929	303.24878925	304.263413947	306.21928064	307.038665497	307.040712241	307.043708382	308.047169681	308.090980265	308.235022494	309.041951809	310.046940741	313.947170267	316.203654392	317.114880954	318.213669955	318.215940621	318.219163989	319.222645274	320.217490758	320.224871533	320.227902206	320.229134825	320.231111598	320.234511416	320.241626804	320.974705507	321.201833228	321.232197081	321.234813105	321.238113065	321.892351677	322.229522709	322.23301528	322.241621481	322.250574378	323.236408988	326.948386194	328.067170959	330.072826092	331.039968776	332.028813361	334.214166454	334.250668262	334.271616498	335.21743312	336.229835303	336.948656669	338.985191711	340.188249498	346.046894367	348.070300004	348.266379527	350.25403947	352.224602434	357.249414386	366.203861182	369.222872079	370.052089279	370.217696745	370.247962938	371.326530086	372.206249404	372.245046935	372.329856912	373.244333087	374.203335574	376.29721222	377.300668857	378.295467348	378.31301879	381.079072477	383.11569564	384.206323385	385.316989323	386.025883713	386.221824198	387.225262028	387.332638188	388.218983046	389.222358733	393.358426888	394.27986697	395.125200243	395.33770243	396.25078971	396.308075518	396.341053427	398.020297889	398.032874064	399.144242079	399.357767697	400.157233205	407.293469086	408.007909317	408.020525014	408.951037638	409.056820106	411.332645717	413.348315017	413.373403903	414.006828619	415.156897262	416.084309262	423.981765103	424.281826443	425.125683491	425.135463252	425.28532915	426.138910614	426.280170349	427.133904681	427.142968192	429.262746682	435.061172652	435.330083765	435.988638501	437.138585394	443.081997167	443.233520419	445.249096557	445.988977013	450.329735454	451.962532082	453.068896429	453.112608304	454.040051872	456.273048614	457.043005407	461.332821274	461.962854671	467.23109072	469.055315064	469.324281969	469.410689679	470.013893312	471.061108818	473.01699606	476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 batch04_B02_rep01_301_2_302_3_303	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	6129.35201099	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	21758.7276042	0.0	0.0	0.0	0.0	0.0	5931.98396487	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	9484.5	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	14149.3982422	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	39757.2884007	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
 batch04_QC17_rep01_262_2_263_3_264	84070.4861979	0.0	40012.0361328	0.0	32634.3841363	142847.610156	32439.7931785	29389.4007161	306928.140625	36864.595638	30316.1971499	0.0	42811.5641927	49864.1898438	0.0	33371.2676866	128772.124479	44018.2648438	27739.8258789	62363.3053385	325311.560417	1535665.93333	15548107.2333	1750115.125	39382.7370877	0.0	83486.1335937	288180.432292	29307.8091724	105822.946875	34162.8904948	116901.78776	439740.420833	37687.7088867	28100.9948381	47718.0498698	79430.0821614	30379.2901042	75556.7983073	511817.746875	41057.9638382	59037.6923177	123614.413542	41024.9742839	39396.7452149	230697.046875	88630.4096354	60423.4825521	181615.411459	1247453.02292	95525.1445604	121622.561719	53849.2415365	30991.4224227	0.0	56676.3460938	62974.741276	362263.1125	32116.0161676	88901.80625	322627.553646	2257564.4875	0.0	59561.0648437	40033.2408854	108741.869792	668136.670833	48010.5511718	41095.5236979	111597.505469	696055.108333	49879.7277344	81638.4589844	30201.8979415	0.0	31915.3470975	180558.499219	94638.5373697	84138.3705019	702227.977273	36034.3831676	49899.7069129	37096.9421165	50223.2786458	29070.3342882	28742.8992694	81505.6245265	39667.7985914	71179.3533381	0.0	3467074.69697	300459.098485	28176.2019856	26514.5295818	201382.723485	0.0	59409.4650805	530296.53125	0.0	39353.1708688	60087.2660985	113266.681582	134568.492188	60361.4830729	88252.5582387	46084.6038115	462735.116477	0.0	31820.8708925	34639.8243963	77270.4509943	52661.4463778	149684.068419	123766.892519	81776.0867661	40889.3801491	41597.1732362	44273.2896544	0.0	67379.7269176	27233.3342634	0.0	64862.4509943	431188.875	33108.5206143	0.0	171164.481061	32394.6933416	67643.1482008	166776.176136	104935.344697	725141.484848	27523.3700087	27462.2327203	44204.8777225	0.0	513732.245265	7718901.84849	572010.700757	62831.8329782	32173.659594	85958.9573864	561510.346591	0.0	54412.685606	42853.1708097	110455.352746	37140.5320194	26949.9211465	32053.8004616	45344.8424479	31840.5043147	0.0	41628.1402699	139757.87571	0.0	80295.9867424	933729.051136	134656.290246	38724.8513258	144970.852746	81966.5026041	72877.4524147	76202.0915009	19131.9811053	19686.7646463	49607.4807478	426460.433036	52306.4335007	20106.9999392	25716.375093	105588.855097	960348.486607	34882.4533343	105216.061756	22492.0565834	19038.6569096	52652.718471	31598.0380859	23152.1170015	85898.3792782	19588.7228637	46752.8920201	47890.4087612	495552.650298	54016.82766	113872.795759	21363.7345455	18350.3374963	185486.449777	43050.5387835	68239.9863281	710361.991071	20205.0047952	59549.9262463	18366.7177327	25988.0144625	19871.8579906	25591.8705822	0.0	33360.9173177	95880.9244792	21118.1981027	0.0	47005.1946615	52113.8198475	63122.515625	0.0	49966.4462426	21229.186502	23857.8347535	18927.5098686	18190.7344029	0.0	18303.8446542	18921.0765439	0.0	41850.8658854	0.0	122583.927195	32750.4317058	0.0	0.0	0.0	20119.4587403	20770.5909598	50441.3134315	675579.713393	67388.1417039	95530.4049354	0.0	47253.6913815	25291.8417969	21355.3736318	34127.6311632	43774.1034412	0.0	21611.9492724	315405.813343	54923.3221726	20354.5895725	0.0	46672.1274863	0.0	0.0	2843450.64444	0.0	83797.6920263	35961.8415147	0.0	31854.9532472	469401.949107	24166.9487537	0.0	158148.201724	37146.0532986	33394.2039559	27710.7833395	0.0	28229.6058737	34543.5405878	32705.5657955	22322.4461599	105331.635491	0.0	0.0	22863.7937593	96647.2185515	66389.0985801	19666.4941639	28443.7317181	40708.8327257	31889.5850694	0.0	0.0	55336.0797433	47032.9133991	32525.9211739	67962.619992	33392.9909856	25904.4080028	0.0	47486.0338542	0.0	0.0	0.0	35680.3385417	0.0	286618.774038	61348.5552885	17386.5322433	19573.4436098	26032.263121	28826.800631	0.0	0.0	99876.7646234	95438.346567	0.0	0.0	0.0	0.0	0.0	20172.2056645	15352.0354614	21786.7867087	19179.5039814	0.0	0.0	0.0	0.0	17443.7988031	0.0	22781.0438702	0.0	17039.5705766	0.0	0.0	14910.4386928	0.0	18107.2967707	0.0	0.0	19201.4300339	15811.4448403	0.0	300489.584936	15300.5416854	904878.918268	58340.3378405	193121.434896	16247.6065955	53258.3621795	17756.0477389	0.0	0.0	0.0	0.0	12898.6224656	14714.1943413	0.0	30832.9049479	27451.9506711	0.0	0.0	0.0	18283.2295423	25366.1241987	21771.1329627	13289.9491699	50788.6054688	29618.2797476	0.0	0.0	23592.4605619	23614.7695813	15751.7053974	0.0	0.0	21673.1272536	14901.4482187	0.0	0.0	20555.3001052	17461.010185	0.0	20224.8436999	0.0	16402.214755	28897.4734075	59926.7234325	16678.2387299	0.0	9986.54485528	14686.1095336	16111.0871561	9937.31524756	12657.9144288	11598.8817654	13834.8805339	0.0	277325.360197	84140.9923733	0.0	0.0	0.0	107081.169137	33582.5045072	0.0	36478.29483	2522421.07639	76449.2788295	12338.506548	0.0	0.0	17386.7018375	791505.275907	11372.185791	185876.547109	97417.9034039	47654.3159847	0.0	16926.4069031	0.0	0.0	13243.3108223	0.0	0.0	0.0	131825.834619	36637.1871265	0.0
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+batch04_S01_rep01_247_2_248_3_249	75661.9152344	32426.2638672	0.0	37153.853125	29157.5138579	69397.7929688	0.0	0.0	171352.920833	33188.405136	0.0	31275.19734	32625.4074508	47105.5606771	31015.4951823	32450.8670573	101834.059896	45483.2532552	37785.3966146	87564.9338542	449483.561458	2035922.99167	20506869.8	2360257.82083	51068.0911459	30479.0742839	80324.7497396	275370.386979	36743.0329427	126032.773438	40203.8609375	148157.292969	571837.39375	53255.8532986	0.0	61401.8567708	40844.759375	0.0	58446.9075521	399714.763542	33801.1007161	35140.682487	91467.1914063	46092.2585937	0.0	59685.0216146	75417.1070313	27727.3874024	67655.2373698	421695.090625	0.0	0.0	0.0	0.0	34675.1266114	53353.3583333	30312.1079055	176395.807813	39563.0611545	92778.5830729	368217.978125	2589303.19167	222316.395834	39939.0320963	50918.9657552	142174.205729	861803.833333	71481.8338542	0.0	59911.4585937	343706.757292	29198.8929986	88914.2354166	0.0	32338.2495931	0.0	136740.753646	85044.7835938	40625.5928819	314133.819287	30864.4441821	0.0	0.0	0.0	0.0	0.0	91214.1764915	48946.6908045	79060.7282631	501525.56498	3998792.83144	350395.191367	28647.7264323	27727.4832012	231284.080374	30724.472163	111374.140684	950393.925663	41465.5674815	69493.0027423	47600.7256846	110465.472577	157527.609217	67019.9925525	83479.8228378	63670.523911	628735.534091	27049.8808593	41198.208067	59509.2936691	109159.824712	47887.6653153	29075.0419116	71806.3585365	156071.826665	0.0	0.0	0.0	32089.6989879	68531.7921106	0.0	30221.0310882	57407.8662603	376787.278014	0.0	41302.3691998	284592.552715	31272.8382162	35768.1149138	163282.826468	64573.8773378	428675.28125	42556.8198538	0.0	28555.8812397	221634.605468	540260.536616	8535363.9053	637690.522254	53398.3073805	0.0	99238.2958689	604875.090751	28030.2354782	27713.4003581	45013.9758424	85621.5451783	34503.327617	27492.0458985	0.0	50703.6310369	27876.122526	30924.4549262	34248.8084902	274465.635496	28564.9938475	73848.1836727	868657.55161	100127.096335	0.0	107189.000769	74855.1697246	44218.4837536	78263.7571812	0.0	22698.1600329	34816.5754464	313890.845387	37872.1027871	0.0	31850.4178075	137319.952901	1254363.10516	0.0	138911.806386	22508.9044922	0.0	96194.9694569	71786.9004216	0.0	83165.9085937	22083.0000543	44524.1178386	53219.1476252	563467.506151	61452.0262835	121461.770077	0.0	22174.7870939	234800.567807	37164.1391245	45122.2787822	434254.057589	0.0	37092.6867095	0.0	0.0	0.0	25167.2324755	33594.2303323	24355.0742513	163861.212078	23160.4090286	21964.9843811	45369.4699901	42101.4501798	105624.266332	22512.4054512	63188.0389819	0.0	52955.5375868	25661.128635	0.0	22295.725614	28190.3489056	0.0	186318.821652	45349.4178076	28129.2578373	52889.2135107	37808.0831721	29538.2348725	48844.1354291	96244.6572481	43880.4109995	0.0	0.0	574059.297421	57604.3296999	78127.0883308	29071.1990289	42197.1028739	41416.6056052	0.0	110157.383321	35188.0299851	36365.8874814	133851.823128	1030898.46736	179443.65744	74687.6008309	32620.488847	0.0	178877.277587	424581.210367	9470685.43492	27564.084517	83400.0044767	0.0	58153.7635107	144474.419469	1424719.79246	0.0	44984.3376178	475144.365873	108507.602058	83007.3273065	83981.0337054	34242.9663179	29854.6649034	0.0	0.0	29646.7611002	118081.919841	32816.7602376	86720.4192056	0.0	152571.8	87342.6934896	0.0	0.0	33841.5495567	33583.9862155	30602.8643881	51473.8918527	0.0	0.0	21959.403428	34300.0228508	29778.2274353	0.0	67241.2769253	146305.931791	101036.592634	21652.2562272	32429.3978687	0.0	32222.7536273	175021.826208	38369.6506696	0.0	0.0	0.0	0.0	22986.0348947	40652.6881582	125281.944211	333543.300996	88068.3863002	32840.781529	142280.768973	26541.6538086	42199.8421117	78079.7740385	0.0	108447.628663	0.0	26641.51653	24296.9988267	17470.7663011	22751.9079348	0.0	26518.3509866	40548.6571836	19823.9536167	18431.7802843	18001.3932693	18000.4803421	0.0	46093.6097041	69388.9127175	40983.1330987	32112.2245843	24770.5678568	22212.354832	19148.4904313	154255.921804	0.0	1063613.37901	31026.9425061	225684.520175	0.0	62285.5514108	19884.966638	17934.411345	19090.4885045	19432.6256844	19107.3232944	0.0	0.0	25360.8145032	203560.854567	60629.8506611	29693.7763923	26134.7972256	19277.6781496	23161.9888822	40219.9194211	0.0	29817.9132111	32708.1322116	84717.5342548	27774.1763822	18993.7802233	0.0	24053.9997747	24988.0221354	16436.9423043	22073.4002654	20138.1137925	0.0	46858.1088491	17052.9176137	21167.997496	34787.1693209	23414.4755108	37938.5930489	19106.9090169	0.0	21314.306265	71192.1812984	20811.2708312	15141.0796091	0.0	0.0	15828.4004729	0.0	14286.5203961	0.0	0.0	24021.2551677	717237.77353	321793.089844	32279.7720572	40430.6411822	16052.603766	196613.679988	59718.0442291	30108.7345545	47967.01163	3177844.60844	102904.264724	0.0	110199.694511	15259.9590553	22302.9383347	988971.083066	0.0	231091.970987	121895.147887	59537.7919504	24667.618235	18404.367872	74641.0067358	23476.3904414	14867.3283224	37019.7582799	34291.0102956	16201.0999098	392976.702791	107441.149189	34247.4257437
\ No newline at end of file
diff -r 62bcdba9ddcc -r 79fdd9fc8eba test-data/peak_matrix_as_bf_compr.txt
--- a/test-data/peak_matrix_as_bf_compr.txt	Tue Feb 27 14:03:10 2018 -0500
+++ b/test-data/peak_matrix_as_bf_compr.txt	Wed May 30 09:19:03 2018 -0400
@@ -1,10 +1,10 @@
-mz	missing 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 present				1	1	1	1	2	1	1	1	1	1	1	1	1	1	1	2	1	1	1	1	1	1	1	1	1	2	1	1	1	3	1	1	1	1	1	1	1	1	1	2	1	1	1	1	1	2	1	1	1	1	1	1	1	2	2	1	1	1	1	3	1	1	2	2	2	1	1	1	2	2	2	2	2	2	2	1	2	3	3	2	2	2	2	2	2	1	1	1	1	1	2	1	2	2	1	1	1	1	1	1	1	1	1	1	1	2	3	2	2	1	1	1	2	2	1	3	1	1	1	1	1	1	1	1	1	1	1	2	1	1	1	1	1	1	2	2	2	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	2	1	1	1	1	2	2	2	1	2	2	2	1	1	2	1	2	2	2	2	1	2	2	2	2	1	1	1	1	1	1	1	1	1	1	2	2	1	1	2	2	2	1	1	1	1	1	1	1	2	2	2	1	3	2	2	2	2	1	1	2	2	1	2	2	2	2	1	2	2	1	2	2	1	1	1	2	1	1	1	2	2	1	1	1	2	2	2	1	2	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	2	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	2	2	1	1	1	1	1	1	1	1	1	1	1	2	2	1	2	2	2	2	3	2	1	2	1	2	3	2	2	1	1	1	2	2	1	1	1	2	2	2	2	1	1	1	1	2	1	1	1	1	1	1	1	1	1	2	2	1	1	1	1	1	1	1	2	1	1	1	1	1	1	1	1	1	1	2	1	1	1	1	1	1	1	1	1	1	1	1	2	2	2	1	2	2	1	1	2	1	1	1	2	1	1	1	1	2	1	1	2	2	1	2	1	2	2	2	1	2	2	1	1	2	1	1	2	1	2	2	1	1	1	1	1	2	2	2	2	1	1	2	2	1	1	1	3	2	2	3	2	2	2	1	2	3	1	1	1	1	1	3	1	1	1	1	3	2	1	1	2	1	2	2	1	1	2	2	1	2	1	3	1	1	1	1	2	3	1	2	3	1	1	2	2	2	1	3	1	1	1	1	1	2	3	1	3	1	1	1	1	1	2	2	3	2	2	1	1	1	1	2	2	1	1	2	1	1	1	1	2	1	1	1	3	1	2	3	1	2	3	2	1	2	1	1	1	2	1	2	2	1	1	2	2	1	1	1	1	1	1	1	2	1	3	2	1	2	2	1	3	2	1	1	2	1	1	1	1	2	1	1	3	2	1	1	2	2	1	1	1	2	2	2	1	2	1	1	1	2	1	1	1	1	1	1	1	2	1	1	1	2	1	1	1	1	1	2	2	2	1	1	3	1	1	1	1	2	2	1	1	1	1	1	1	1	1	1	1	1	2	1	2	1	1	1	1	3	1	2	1	1	2	1	1	1	2	1	1	1	1	1	1	1	2	2	1	1	1	1	1	1	1	1	1	1	1	1	1	1	2	2	2	1	2	1	1	1	1	1	1	1	1	1	1	2	1	2	1	1	1	1	1	1	1	1	1	1	2	2	1	1	2	1	3	1	1	1	3	1	2	2	1	1	2	1	1	1	2	2	1	2	1	3	2	2	1	2	2	1	1	1	1	1	1	1	1	1	2	2	2	1	1	1	1	2	1	1	2	1	2	2	1	2	1	1	1	1	1	1	1	2	2	1	1	3	1	1	1	1	1	1	2	1	1	1	1	1	1	2	1	2	1	2	1	1	1	1	1	1	1	1	1	1	1	1	1	1	3	1	1	3	1	2	1	1	2	1	2	1	1	1	1	1	1	1	1	1	2	2	1	1	1	1	3	2	1	1	2	3	3	2	1	3	1	1	1	3	3	1	1	1	1	2	2	1	1	1	2	2	1	1	2	2	1	2	1	1	2	1	2	2	1	2	1	2	2	1	2	1	1	2	1	1	2	1	1	3	2	1	2	2	1
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-rsd_all				nan	nan	nan	nan	7.44464804268	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	7.95741393603	nan	nan	nan	nan	nan	nan	nan	nan	nan	48.9403897991	nan	nan	nan	16.1208244867	nan	nan	nan	nan	nan	nan	nan	nan	nan	40.0877914687	nan	nan	nan	nan	nan	7.42140723217	nan	nan	nan	nan	nan	nan	nan	19.0959428766	4.02320389621	nan	nan	nan	nan	69.0168382411	nan	nan	1.97751570629	16.520015012	2.31482831144	nan	nan	nan	21.6810898698	23.7716957344	22.6647952447	19.8082794922	19.450155988	20.9925495033	18.2702430845	nan	2.72928869643	83.8750434369	66.1115208021	15.9195461534	12.327067359	11.4879595591	16.6762667568	18.4675195476	24.2091693345	nan	nan	nan	nan	nan	17.7344591835	nan	67.2951594484	45.3693275302	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	18.0569928283	82.5359655168	13.7094342665	35.8845387519	nan	nan	nan	21.1375759205	8.22595249942	nan	118.829668852	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	11.3908653579	nan	nan	nan	nan	nan	nan	52.4546850431	64.6542320665	69.9637172766	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	4.27104151826	nan	nan	nan	nan	49.5160244993	48.798238213	14.6928677287	nan	3.01771169782	9.33270805809	9.67943434102	nan	nan	27.889163615	nan	16.926186088	18.843138211	17.9017894518	27.7786791924	nan	42.6188268794	47.9240327229	36.9848597427	6.03303380421	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	19.5297182399	7.5508492559	nan	nan	49.3222230024	54.0012447889	10.9290373533	nan	nan	nan	nan	nan	nan	nan	7.94927146684	14.8083403753	7.41875749154	nan	86.9301483343	10.8504009126	1.17351314152	3.16244801967	9.77354954635	nan	nan	43.0305641304	40.1236754058	nan	39.159997627	16.3979609129	1.77064748731	11.1158945725	nan	7.39240487285	3.93034038849	nan	22.6597583435	21.5085986808	nan	nan	nan	18.161770321	nan	nan	nan	37.3564208113	24.1904833516	nan	nan	nan	6.71427704204	95.4171906069	37.5732833962	nan	44.1753057556	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	1.19876978223	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	8.62218653668	9.52199838886	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	35.196717856	2.49191808531	nan	43.5910973504	1.49680585581	33.6735275234	36.3373577359	71.2213184954	30.3374016279	nan	30.4161520291	nan	3.55948067768	86.7040015113	7.67836657254	11.4781069696	nan	nan	nan	10.1404422858	5.25786822748	nan	nan	nan	45.9762459881	3.47779562592	17.9114968869	5.20570813961	nan	nan	nan	nan	1.40825215985	nan	nan	nan	nan	nan	nan	nan	nan	nan	7.89025710196	9.38847819881	nan	nan	nan	nan	nan	nan	nan	13.7537832697	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	45.991001402	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	5.91561167972	5.10573020313	20.7985986734	nan	21.1895774576	6.41298058833	nan	nan	34.6125608543	nan	nan	nan	1.88755999532	nan	nan	nan	nan	10.0478088132	nan	nan	24.7767044371	21.5029597711	nan	22.6364577418	nan	15.0691847886	18.4738253146	18.7744292593	nan	19.519680163	0.0529467383653	nan	nan	41.369834317	nan	nan	54.9747719465	nan	2.28569684908	8.46483030761	nan	nan	nan	nan	nan	115.888168985	3.45318353419	7.45327646678	9.06933731611	nan	nan	9.1063160092	4.56049895046	nan	nan	nan	53.880798905	13.3462599911	16.5935876239	56.64910323	10.377933875	28.8397338485	34.1141105497	nan	32.8626593953	26.8604356663	nan	nan	nan	nan	nan	51.5107717106	nan	nan	nan	nan	122.607168582	1.18309610182	nan	nan	22.0669957474	nan	37.0131107607	6.52261345997	nan	nan	2.50421912039	15.0290170282	nan	35.6193769015	nan	102.656631033	nan	nan	nan	nan	44.0856775386	70.2988569333	nan	16.5244495002	73.102223466	nan	nan	54.5733575443	53.5718778215	21.3569539301	nan	88.2091697639	nan	nan	nan	nan	nan	30.0717731103	57.8693574695	nan	69.4449658637	nan	nan	nan	nan	nan	55.0090249866	19.6571810851	83.3477196321	2.32332218064	97.1747763022	nan	nan	nan	nan	54.5667925427	5.67394894547	nan	nan	56.1699693307	nan	nan	nan	nan	10.1371171286	nan	nan	nan	78.6158089633	nan	10.7546314804	44.1563693073	nan	39.1769743465	42.247377757	52.5048895826	nan	19.7726572521	nan	nan	nan	11.4890418659	nan	11.0697864218	14.172729267	nan	nan	7.99444667464	34.1843657825	nan	nan	nan	nan	nan	nan	nan	74.5207719802	nan	47.4248894436	15.3776766182	nan	102.101698289	75.1583003629	nan	135.476827106	75.1378659304	nan	nan	80.846707215	nan	nan	nan	nan	76.1102952032	nan	nan	131.485464055	0.336377317388	nan	nan	90.3241326528	71.3271708359	nan	nan	nan	70.7888103378	69.2879762203	60.2771726052	nan	71.2479690375	nan	nan	nan	3.95663144034	nan	nan	nan	nan	nan	nan	nan	19.9313133099	nan	nan	nan	8.07096284963	nan	nan	nan	nan	nan	31.7348579632	128.057505633	19.2756863773	nan	nan	123.569970873	nan	nan	nan	nan	13.0271699446	3.65986616262	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	54.3090001359	nan	27.4263075654	nan	nan	nan	nan	88.457990664	nan	46.5527783151	nan	nan	8.09236827371	nan	nan	nan	72.1146717457	nan	nan	nan	nan	nan	nan	nan	34.187183072	32.5889121734	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	15.9568997856	78.4954922279	10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\ No newline at end of file
diff -r 62bcdba9ddcc -r 79fdd9fc8eba test-data/peak_matrix_as_bf_rmbs.txt
--- a/test-data/peak_matrix_as_bf_rmbs.txt	Tue Feb 27 14:03:10 2018 -0500
+++ b/test-data/peak_matrix_as_bf_rmbs.txt	Wed May 30 09:19:03 2018 -0400
@@ -1,3 +1,3 @@
-mz	98.9954998691	101.777300408	101.781524007	103.038951206	104.106972509	112.052301283	115.036557299	116.070599012	118.086253653	123.013845316	123.055288913	126.021940468	128.010843476	128.994858336	130.049222294	131.009836808	131.010517825	131.018942036	132.074583988	132.075008963	132.075567318	132.076101717	132.076671348	132.077202011	132.077992635	132.078371418	132.10124611	132.101916959	133.073124466	133.073801709	133.078935658	133.079460494	133.080118687	133.080632528	133.105278546	134.080996946	135.002862414	136.04691347	136.047429382	136.04813128	136.048697166	136.061765976	136.940051855	137.029491761	137.045065286	137.045781605	139.015603989	140.066921905	140.067478979	140.06819156	140.068751041	141.015855767	141.071577375	142.94808538	143.988083681	144.101942195	146.116764318	146.117593543	146.165212548	147.075026099	147.07563403	147.076381496	147.076979975	147.112840746	148.002470297	148.003082516	148.003895413	148.004529246	148.059020674	148.059628878	148.060463029	148.061104039	148.079812778	149.063819045	149.999720327	150.975955392	150.976840465	152.022107353	156.041293988	156.04209741	156.076741027	156.989754618	157.045485596	158.040247352	158.921989272	159.027720801	160.133198751	161.128432541	162.110690219	162.111590644	162.112346198	162.113089295	163.045136563	163.114854206	163.115822095	163.976056014	163.976865689	163.977780102	165.97362311	165.975937112	166.086251818	166.950728597	167.021727034	168.00575923	169.058369029	170.031627109	170.032608751	171.036000371	172.03075001	172.984687975	173.080840757	174.89594473	175.001680018	175.118963541	176.102979229	177.134608611	179.128465135	187.125928194	189.052399827	191.040098978	193.001987153	198.084934735	200.067015416	200.068336832	201.071723083	201.932346714	201.933718688	202.066511789	202.180178742	203.040079527	203.051224356	203.052583123	203.931844481	204.04214677	204.056007584	204.120741567	204.121476777	204.122807168	204.123967408	205.055741463	205.097182566	205.124995123	205.126369088	205.154711374	206.05531063	206.1273128	207.014274578	207.078225213	207.988550264	207.998291404	210.087340882	210.089121447	210.940588306	210.985281317	214.058850666	215.069634252	218.137147136	218.138617868	218.18633146	219.017655316	219.026587805	219.142081286	222.029254451	222.988227171	226.104758587	227.113639423	229.152780695	229.154420238	230.157792453	231.144938826	232.151182802	232.152363977	232.154032856	232.155655558	233.157441453	235.066006489	236.992211984	238.022752298	241.129235983	241.154393751	242.078631865	242.115014467	245.13541974	245.147333125	245.149278063	246.152668181	246.169719791	246.180951474	248.146977998	248.148957043	249.045257364	249.153279612	249.155411959	249.157303366	250.158796263	253.094618769	254.018746292	255.13541146	257.041913238	257.091126293	258.109821983	260.185330942	260.196578012	261.188683931	262.128218019	262.164606458	263.145935141	264.172129098	266.187766715	267.11025096	269.087730151	270.109886656	271.137356381	273.005664599	276.180208183	280.091705372	292.203326231	293.071380726	293.206676616	296.06590552	298.992809793	302.242399929	303.24878925	304.263413947	306.21928064	307.038665497	307.040712241	307.043708382	308.047169681	308.090980265	308.235022494	309.041951809	310.046940741	313.947170267	316.203654392	317.114880954	318.213669955	318.215940621	318.219163989	319.222645274	320.217490758	320.224871533	320.227902206	320.229134825	320.231111598	320.234511416	320.241626804	320.974705507	321.201833228	321.232197081	321.234813105	321.238113065	321.892351677	322.229522709	322.23301528	322.241621481	322.250574378	323.236408988	326.948386194	328.067170959	330.072826092	331.039968776	332.028813361	334.214166454	334.250668262	334.271616498	335.21743312	336.229835303	336.948656669	338.985191711	340.188249498	346.046894367	348.070300004	348.266379527	350.25403947	352.224602434	357.249414386	366.203861182	369.222872079	370.052089279	370.217696745	370.247962938	371.326530086	372.206249404	372.245046935	372.329856912	373.244333087	374.203335574	376.29721222	377.300668857	378.295467348	378.31301879	381.079072477	383.11569564	384.206323385	385.316989323	386.025883713	386.221824198	387.225262028	387.332638188	388.218983046	389.222358733	393.358426888	394.27986697	395.125200243	395.33770243	396.25078971	396.308075518	396.341053427	398.020297889	398.032874064	399.144242079	399.357767697	400.157233205	407.293469086	408.007909317	408.020525014	408.951037638	409.056820106	411.332645717	413.348315017	413.373403903	414.006828619	415.156897262	416.084309262	423.981765103	424.281826443	425.125683491	425.135319686	425.28532915	426.138910614	426.280170349	427.133904681	427.142968192	429.262746682	435.061172652	435.330083765	435.988638501	437.138585394	443.081997167	443.233520419	445.249096557	445.988977013	450.329735454	451.962532082	453.068896429	453.112608304	454.040051872	456.273048614	457.043005407	461.332821274	461.962854671	467.23109072	469.055315064	469.324281969	469.410689679	470.013893312	471.061108818	473.01699606	476.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\ No newline at end of file
diff -r 62bcdba9ddcc -r 79fdd9fc8eba test-data/peak_matrix_as_bf_sf.txt
--- a/test-data/peak_matrix_as_bf_sf.txt	Tue Feb 27 14:03:10 2018 -0500
+++ b/test-data/peak_matrix_as_bf_sf.txt	Wed May 30 09:19:03 2018 -0400
@@ -1,4 +1,4 @@
-mz	98.9954998691	104.106972509	112.052301283	118.086253653	123.013845316	128.010843476	128.994858336	131.009836808	131.010517825	131.018942036	132.074583988	132.075008963	132.075567318	132.076101717	132.076671348	132.077202011	132.077992635	132.10124611	132.101899697	133.073124466	133.073801709	133.078935658	133.079460494	133.080118687	133.080632528	134.080996946	135.002862414	136.047429382	136.048119883	136.048697166	136.061765976	136.940051855	137.029491761	137.045773739	139.015603989	140.066921905	140.067478979	140.06819156	144.101942195	146.116764318	146.117593543	146.165212548	147.075026099	147.07563403	147.076381496	147.112840746	148.002470297	148.003082516	148.003895413	148.004529246	148.059628878	148.060463029	148.061104039	148.079812778	150.976840465	152.022107353	156.041293988	156.04209741	156.076741027	160.133198751	161.128432541	162.110690219	162.112377858	162.113089295	163.045136563	163.114854206	163.115822095	163.976865689	163.977780102	165.975937112	166.086251818	166.950728597	167.021727034	168.00575923	169.058369029	170.031627109	170.032608751	172.03075001	172.984687975	173.080840757	174.89594473	175.001680018	175.118963541	176.102979229	191.040098978	200.067015416	200.068336832	201.933718688	202.066511789	202.180178742	203.040079527	203.051224356	203.052583123	203.931844481	204.056007584	204.121476777	204.122881675	204.123967408	205.055741463	205.124995123	205.126369088	206.05531063	206.1273128	207.014274578	207.078225213	207.988550264	210.087340882	210.089121447	210.985281317	214.058850666	218.137147136	218.138617868	218.18633146	219.026587805	219.142081286	222.029254451	222.988227171	227.113639423	229.152780695	229.154420238	230.157792453	232.151182802	232.152363977	232.154032856	233.157441453	235.066006489	238.022752298	241.129235983	242.078631865	242.115014467	245.13541974	245.147333125	245.149278063	246.152668181	246.169719791	248.146977998	248.148957043	249.045257364	249.153279612	249.155411959	250.158796263	257.041913238	258.109821983	260.185330942	260.196578012	262.128218019	262.164606458	263.145935141	266.187766715	269.087730151	270.109886656	276.180208183	293.071380726	296.06590552	298.992809793	306.21928064	307.043708382	308.047169681	308.090980265	309.041951809	310.046940741	316.203654392	317.114880954	318.215940621	318.219163989	319.222645274	320.217490758	320.234511416	320.974705507	321.234813105	321.238113065	322.23301528	322.241621481	322.250574378	323.236408988	328.067170959	332.028813361	334.214166454	336.229835303	336.948656669	346.046894367	348.070300004	366.203861182	369.222872079	370.052089279	371.326530086	376.29721222	377.300668857	386.025883713	386.221824198	394.27986697	395.33770243	400.157233205	408.007909317	413.348315017	415.156897262	416.084309262	424.281826443	425.135463252	425.28532915	426.138910614	427.133904681	427.142968192	445.249096557	445.988977013	453.112608304	454.040051872	457.043005407	461.332821274	461.962854671	469.410689679	470.013893312	476.227406838	483.075340494	483.944790467	484.323934317	517.396406557	518.25000135	519.253359366	527.183398853	533.249780822	545.423300216	546.426817562	548.28553146	549.289149666	553.348831297	553.367591025	553.376240677	554.355151822	554.371473263	555.366527064	555.37434307	556.370112699	557.095013624	559.151213812	569.363651248	570.367404206
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 batch04_B02_rep01_301_2_302_3_303	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	6129.35201099	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	21758.7276042	0.0	0.0	0.0	0.0	5931.98396487	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	9484.5	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	14149.3982422	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	39757.2884007	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
 batch04_QC17_rep01_262_2_263_3_264	84070.4861979	32634.3841363	142847.610156	306928.140625	36864.595638	42811.5641927	49864.1898438	33371.2676866	128772.124479	44018.2648438	27739.8258789	62363.3053385	325311.560417	1535665.93333	15548107.2333	1750115.125	39382.7370877	83486.1335937	288180.432292	29307.8091724	105822.946875	34162.8904948	116901.78776	439740.420833	37687.7088867	47718.0498698	79430.0821614	75556.7983073	511817.746875	41057.9638382	59037.6923177	123614.413542	41024.9742839	230697.046875	88630.4096354	60423.4825521	181615.411459	1247453.02292	56676.3460938	62974.741276	362263.1125	32116.0161676	88901.80625	322627.553646	2257564.4875	59561.0648437	40033.2408854	108741.869792	668136.670833	48010.5511718	111597.505469	696055.108333	49879.7277344	81638.4589844	180558.499219	94638.5373697	84138.3705019	702227.977273	36034.3831676	81505.6245265	39667.7985914	71179.3533381	3467074.69697	300459.098485	28176.2019856	26514.5295818	201382.723485	59409.4650805	530296.53125	39353.1708688	60087.2660985	113266.681582	134568.492188	60361.4830729	88252.5582387	46084.6038115	462735.116477	31820.8708925	34639.8243963	77270.4509943	52661.4463778	149684.068419	123766.892519	81776.0867661	67379.7269176	64862.4509943	431188.875	171164.481061	32394.6933416	67643.1482008	166776.176136	104935.344697	725141.484848	27523.3700087	44204.8777225	513732.245265	7718901.84849	572010.700757	62831.8329782	85958.9573864	561510.346591	54412.685606	42853.1708097	110455.352746	37140.5320194	26949.9211465	45344.8424479	31840.5043147	41628.1402699	139757.87571	80295.9867424	933729.051136	134656.290246	144970.852746	81966.5026041	72877.4524147	76202.0915009	19686.7646463	49607.4807478	426460.433036	52306.4335007	25716.375093	105588.855097	960348.486607	105216.061756	22492.0565834	52652.718471	31598.0380859	85898.3792782	19588.7228637	46752.8920201	47890.4087612	495552.650298	54016.82766	113872.795759	18350.3374963	185486.449777	43050.5387835	68239.9863281	710361.991071	59549.9262463	25591.8705822	33360.9173177	95880.9244792	21118.1981027	47005.1946615	52113.8198475	63122.515625	49966.4462426	23857.8347535	18927.5098686	18303.8446542	41850.8658854	122583.927195	32750.4317058	20119.4587403	675579.713393	67388.1417039	95530.4049354	47253.6913815	25291.8417969	34127.6311632	43774.1034412	21611.9492724	315405.813343	54923.3221726	20354.5895725	2843450.64444	83797.6920263	31854.9532472	469401.949107	158148.201724	37146.0532986	33394.2039559	27710.7833395	28229.6058737	22322.4461599	105331.635491	96647.2185515	66389.0985801	40708.8327257	31889.5850694	32525.9211739	67962.619992	33392.9909856	47486.0338542	286618.774038	61348.5552885	99876.7646234	95438.346567	20172.2056645	21786.7867087	22781.0438702	17039.5705766	18107.2967707	19201.4300339	15811.4448403	300489.584936	904878.918268	58340.3378405	193121.434896	53258.3621795	17756.0477389	30832.9049479	27451.9506711	18283.2295423	25366.1241987	13289.9491699	50788.6054688	29618.2797476	23614.7695813	15751.7053974	21673.1272536	20555.3001052	17461.010185	20224.8436999	28897.4734075	59926.7234325	16678.2387299	16111.0871561	12657.9144288	277325.360197	84140.9923733	107081.169137	33582.5045072	36478.29483	2522421.07639	76449.2788295	17386.7018375	791505.275907	185876.547109	97417.9034039	47654.3159847	16926.4069031	13243.3108223	131825.834619	36637.1871265
-batch04_S01_rep01_247_2_248_3_249	75661.9152344	29157.5138579	69397.7929688	171352.920833	33188.405136	32625.4074508	47105.5606771	32450.8670573	101834.059896	45483.2532552	37785.3966146	87564.9338542	449483.561458	2035922.99167	20506869.8	2360257.82083	51068.0911459	80324.7497396	275370.386979	36743.0329427	126032.773438	40203.8609375	148157.292969	571837.39375	53255.8532986	61401.8567708	40844.759375	58446.9075521	399714.763542	33801.1007161	35140.682487	91467.1914063	46092.2585937	59685.0216146	75417.1070313	27727.3874024	67655.2373698	421695.090625	53353.3583333	30312.1079055	176395.807813	39563.0611545	92778.5830729	368217.978125	2589303.19167	39939.0320963	50918.9657552	142174.205729	861803.833333	71481.8338542	59911.4585937	343706.757292	29198.8929986	88914.2354166	136740.753646	85044.7835938	40625.5928819	314133.819287	30864.4441821	91214.1764915	48946.6908045	79060.7282631	3998792.83144	350395.191367	28647.7264323	27727.4832012	231284.080374	111374.140684	950393.925663	69493.0027423	47600.7256846	110465.472577	157527.609217	67019.9925525	83479.8228378	63670.523911	628735.534091	41198.208067	59509.2936691	109159.824712	47887.6653153	29075.0419116	71806.3585365	156071.826665	68531.7921106	57407.8662603	376787.278014	284592.552715	31272.8382162	35768.1149138	163282.826468	64573.8773378	428675.28125	42556.8198538	28555.8812397	540260.536616	8535363.9053	637690.522254	53398.3073805	99238.2958689	604875.090751	27713.4003581	45013.9758424	85621.5451783	34503.327617	27492.0458985	50703.6310369	27876.122526	34248.8084902	274465.635496	73848.1836727	868657.55161	100127.096335	107189.000769	74855.1697246	44218.4837536	78263.7571812	22698.1600329	34816.5754464	313890.845387	37872.1027871	31850.4178075	137319.952901	1254363.10516	138911.806386	22508.9044922	96194.9694569	71786.9004216	83165.9085937	22083.0000543	44524.1178386	53219.1476252	563467.506151	61452.0262835	121461.770077	22174.7870939	234800.567807	37164.1391245	45122.2787822	434254.057589	37092.6867095	25167.2324755	24355.0742513	163861.212078	23160.4090286	45369.4699901	42101.4501798	105624.266332	63188.0389819	52955.5375868	25661.128635	28190.3489056	45349.4178076	52889.2135107	37808.0831721	43880.4109995	574059.297421	57604.3296999	78127.0883308	42197.1028739	41416.6056052	110157.383321	35188.0299851	133851.823128	1030898.46736	179443.65744	74687.6008309	9470685.43492	83400.0044767	144474.419469	1424719.79246	475144.365873	108507.602058	83007.3273065	83981.0337054	29854.6649034	29646.7611002	118081.919841	152571.8	87342.6934896	33841.5495567	33583.9862155	21959.403428	34300.0228508	29778.2274353	146305.931791	175021.826208	38369.6506696	125281.944211	333543.300996	78079.7740385	108447.628663	40548.6571836	18431.7802843	69388.9127175	24770.5678568	22212.354832	154255.921804	1063613.37901	31026.9425061	225684.520175	62285.5514108	19884.966638	203560.854567	60629.8506611	23161.9888822	40219.9194211	29817.9132111	32708.1322116	84717.5342548	24053.9997747	24988.0221354	20138.1137925	21167.997496	34787.1693209	37938.5930489	21314.306265	71192.1812984	20811.2708312	15828.4004729	14286.5203961	717237.77353	321793.089844	196613.679988	59718.0442291	47967.01163	3177844.60844	102904.264724	22302.9383347	988971.083066	231091.970987	121895.147887	59537.7919504	18404.367872	14867.3283224	392976.702791	107441.149189
+batch04_S01_rep01_247_2_248_3_249	75661.9152344	29157.5138579	69397.7929688	171352.920833	33188.405136	32625.4074508	47105.5606771	32450.8670573	101834.059896	45483.2532552	37785.3966146	87564.9338542	449483.561458	2035922.99167	20506869.8	2360257.82083	51068.0911459	80324.7497396	275370.386979	36743.0329427	126032.773438	40203.8609375	148157.292969	571837.39375	53255.8532986	61401.8567708	40844.759375	58446.9075521	399714.763542	33801.1007161	35140.682487	91467.1914063	46092.2585937	59685.0216146	75417.1070313	27727.3874024	67655.2373698	421695.090625	53353.3583333	30312.1079055	176395.807813	39563.0611545	92778.5830729	368217.978125	2589303.19167	39939.0320963	50918.9657552	142174.205729	861803.833333	71481.8338542	59911.4585937	343706.757292	29198.8929986	88914.2354166	136740.753646	85044.7835938	40625.5928819	314133.819287	30864.4441821	91214.1764915	48946.6908045	79060.7282631	3998792.83144	350395.191367	28647.7264323	27727.4832012	231284.080374	111374.140684	950393.925663	69493.0027423	47600.7256846	110465.472577	157527.609217	67019.9925525	83479.8228378	63670.523911	628735.534091	41198.208067	59509.2936691	109159.824712	47887.6653153	29075.0419116	71806.3585365	156071.826665	68531.7921106	57407.8662603	376787.278014	284592.552715	31272.8382162	35768.1149138	163282.826468	64573.8773378	428675.28125	42556.8198538	28555.8812397	540260.536616	8535363.9053	637690.522254	53398.3073805	99238.2958689	604875.090751	27713.4003581	45013.9758424	85621.5451783	34503.327617	27492.0458985	50703.6310369	27876.122526	34248.8084902	274465.635496	73848.1836727	868657.55161	100127.096335	107189.000769	74855.1697246	44218.4837536	78263.7571812	22698.1600329	34816.5754464	313890.845387	37872.1027871	31850.4178075	137319.952901	1254363.10516	138911.806386	22508.9044922	96194.9694569	71786.9004216	83165.9085937	22083.0000543	44524.1178386	53219.1476252	563467.506151	61452.0262835	121461.770077	22174.7870939	234800.567807	37164.1391245	45122.2787822	434254.057589	37092.6867095	25167.2324755	24355.0742513	163861.212078	23160.4090286	45369.4699901	42101.4501798	105624.266332	63188.0389819	52955.5375868	25661.128635	28190.3489056	45349.4178076	52889.2135107	37808.0831721	43880.4109995	574059.297421	57604.3296999	78127.0883308	42197.1028739	41416.6056052	110157.383321	35188.0299851	133851.823128	1030898.46736	179443.65744	74687.6008309	9470685.43492	83400.0044767	144474.419469	1424719.79246	475144.365873	108507.602058	83007.3273065	83981.0337054	29854.6649034	29646.7611002	118081.919841	152571.8	87342.6934896	33841.5495567	33583.9862155	21959.403428	34300.0228508	29778.2274353	146305.931791	175021.826208	38369.6506696	125281.944211	333543.300996	78079.7740385	108447.628663	40548.6571836	18431.7802843	69388.9127175	24770.5678568	22212.354832	154255.921804	1063613.37901	31026.9425061	225684.520175	62285.5514108	19884.966638	203560.854567	60629.8506611	23161.9888822	40219.9194211	29817.9132111	32708.1322116	84717.5342548	24053.9997747	24988.0221354	20138.1137925	21167.997496	34787.1693209	37938.5930489	21314.306265	71192.1812984	20811.2708312	15828.4004729	14286.5203961	717237.77353	321793.089844	196613.679988	59718.0442291	47967.01163	3177844.60844	102904.264724	22302.9383347	988971.083066	231091.970987	121895.147887	59537.7919504	18404.367872	14867.3283224	392976.702791	107441.149189
\ No newline at end of file
diff -r 62bcdba9ddcc -r 79fdd9fc8eba test-data/peak_matrix_as_bf_sf_compr.txt
--- a/test-data/peak_matrix_as_bf_sf_compr.txt	Tue Feb 27 14:03:10 2018 -0500
+++ b/test-data/peak_matrix_as_bf_sf_compr.txt	Wed May 30 09:19:03 2018 -0400
@@ -1,11 +1,11 @@
-mz	missing values	tags_classLabel	tags_untyped	95.0854867136	96.0477230462	97.0647529114	97.1011384065	98.9954998691	99.0804011767	101.003118017	101.059284262	101.059667337	101.777300408	101.781524007	102.127686063	102.970223555	103.038951206	103.075318834	104.106972509	105.003234195	105.090964311	107.070230246	107.085062328	107.085488315	109.100703053	109.101137314	111.08040236	111.116786045	112.052301283	113.059666808	113.096051485	114.065677969	114.066170487	114.091302909	115.036557299	115.075318293	115.111705216	116.070599012	116.985382141	116.98587154	117.054583395	117.090968646	118.086253653	119.085485311	120.980267261	120.980786531	121.00756219	121.064754009	123.013845316	123.055288913	123.116788199	125.095487802	125.096051948	126.021940468	127.075321735	127.111706998	128.010843476	128.994858336	129.090369007	129.090974735	129.127358602	130.049222294	130.049863468	130.964513436	130.965138358	131.009836808	131.010517825	131.018942036	131.070233883	131.085482301	131.106615399	132.074583988	132.075008963	132.075567318	132.076101717	132.076671348	132.077202011	132.077992635	132.078371418	132.10124611	132.101899697	133.034572295	133.073124466	133.073801709	133.078935658	133.079460494	133.080118687	133.080632528	133.085244134	133.08588551	133.100506766	133.101138251	133.105278546	134.080996946	134.986830233	134.996465421	135.002862414	135.044024062	135.079258734	135.079764229	135.08038938	135.08097732	135.100884718	135.101532646	135.116137118	135.116787748	136.021508699	136.04691347	136.047429382	136.048119883	136.048697166	136.061765976	136.073251744	136.083096309	136.083761924	136.940051855	137.029491761	137.045065286	137.045773739	137.056596193	137.057269511	137.058997556	137.059672042	137.094876372	137.095391733	137.096043901	137.096633067	137.132444496	138.091309182	138.099413241	139.015603989	139.036530811	139.072917036	139.074630285	139.075322774	139.111014214	139.111701664	140.066921905	140.067478979	140.06819156	140.068751041	140.106954463	140.115061283	141.015855767	141.05218138	141.071577375	141.087852717	141.088567109	141.090252262	141.090971445	141.127355825	142.047430796	142.086228559	142.121881522	142.122604088	142.158992032	142.94808538	143.001525805	143.085493568	143.10588682	143.106624835	143.988083681	144.080733504	144.101942195	144.980789437	145.047092142	145.101135997	145.122261684	146.116764318	146.117593543	146.165212548	146.99644084	147.075026099	147.07563403	147.076381496	147.076979975	147.080407767	147.112840746	147.116791771	148.002470297	148.003082516	148.003895413	148.004529246	148.059020674	148.059628878	148.060463029	148.061104039	148.079812778	149.002478676	149.022503043	149.023281113	149.044827912	149.059672206	149.063819045	149.09606266	149.132443185	149.999720327	150.975955392	150.976840465	152.022107353	152.106952838	155.106635915	156.041293988	156.04209741	156.076741027	156.989754618	157.045485596	158.040247352	158.117532287	158.921989272	159.027720801	159.065165762	160.133198751	161.128432541	162.110690219	162.111590644	162.112377858	162.113089295	163.045136563	163.114854206	163.115822095	163.148118188	163.976056014	163.976865689	163.977780102	165.97362311	165.975937112	166.086251818	166.950728597	167.021727034	167.104235181	168.00575923	169.058369029	169.122302355	170.031627109	170.032608751	170.117542392	171.036000371	171.10155643	172.03075001	172.131391412	172.132189987	172.133058362	172.984687975	173.080840757	173.132465407	173.136536346	174.112454069	174.89594473	175.001680018	175.118963541	175.148114856	176.102979229	177.134608611	179.128465135	180.099485034	181.064781256	183.135542334	184.09440398	186.1488452	187.125928194	188.126027407	188.126982017	188.127958364	189.052399827	189.112130373	189.131443965	189.159733638	191.040098978	191.104244442	191.106642836	191.139020145	191.143026735	191.164168196	193.001987153	193.107326275	193.122293797	193.158657464	194.112909063	194.113937225	194.115013807	194.162041956	195.017597191	195.099164614	195.118489509	195.122688638	195.137953706	195.174329384	196.093111731	196.094365648	196.133188662	196.954419421	197.078436232	197.151198232	197.15359074	198.084934735	198.11005386	198.148826946	198.185230589	199.094085221	199.130443878	199.13285878	199.167928041	199.169182065	199.20565281	200.067015416	200.068336832	200.128114646	200.163168249	200.164421525	200.172596426	200.200872992	201.071723083	201.112137504	201.148516239	201.167861307	201.18489544	201.932346714	201.933718688	202.066511789	202.143739474	202.180178742	203.040079527	203.051224356	203.052583123	203.139034837	203.931844481	204.04214677	204.056007584	204.120741567	204.121476777	204.122881675	204.123967408	205.055741463	205.08591946	205.097182566	205.122293634	205.124995123	205.126369088	205.154711374	205.158691684	205.195062356	206.05531063	206.1273128	207.014274578	207.078225213	207.101570295	207.137952093	207.159083317	207.174339207	207.988550264	207.998291404	208.09441105	208.130805683	208.169561137	209.117232919	209.153584829	209.172945534	209.177406022	209.189980267	2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 present				1	1	1	1	2	1	1	1	1	1	1	1	1	1	1	2	1	1	1	1	1	1	1	1	1	2	1	1	1	3	1	1	1	1	1	1	1	1	1	2	1	1	1	1	1	2	1	1	1	1	1	1	1	2	2	1	1	1	1	3	1	1	2	2	2	1	1	1	2	2	2	2	2	2	2	1	2	3	3	2	2	2	2	2	2	1	1	1	1	1	2	1	2	2	1	1	1	1	1	1	1	1	1	1	1	2	3	2	2	1	1	1	2	2	1	3	1	1	1	1	1	1	1	1	1	1	1	2	1	1	1	1	1	1	2	2	2	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	2	1	1	1	1	2	2	2	1	2	2	2	1	1	2	1	2	2	2	2	1	2	2	2	2	1	1	1	1	1	1	1	1	1	1	2	2	1	1	2	2	2	1	1	1	1	1	1	1	2	2	2	1	3	2	2	2	2	1	1	2	2	1	2	2	2	2	1	2	2	1	2	2	1	1	1	2	1	1	1	2	2	1	1	1	2	2	2	1	2	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	2	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	2	2	1	1	1	1	1	1	1	1	1	1	1	2	2	1	2	2	2	2	3	2	1	2	1	2	3	2	2	1	1	1	2	2	1	1	1	2	2	2	2	1	1	1	1	2	1	1	1	1	1	1	1	1	1	2	2	1	1	1	1	1	1	1	2	1	1	1	1	1	1	1	1	1	1	2	1	1	1	1	1	1	1	1	1	1	1	1	2	2	2	1	2	2	1	1	2	1	1	1	2	1	1	1	1	2	1	1	2	2	1	2	1	2	2	2	1	2	2	1	1	2	1	1	2	1	2	2	1	1	1	1	1	2	2	2	2	1	1	2	2	1	1	1	3	2	2	3	2	2	2	1	2	3	1	1	1	1	1	3	1	1	1	1	3	2	1	1	2	1	2	2	1	1	2	2	1	2	1	3	1	1	1	1	2	3	1	2	3	1	1	2	2	2	1	3	1	1	1	1	1	2	3	1	3	1	1	1	1	1	2	2	3	2	2	1	1	1	1	2	2	1	1	2	1	1	1	1	2	1	1	1	3	1	2	3	1	2	3	2	1	2	1	1	1	2	1	2	2	1	1	2	2	1	1	1	1	1	1	1	2	1	3	2	1	2	2	1	3	2	1	1	2	1	1	1	1	2	1	1	3	2	1	1	2	2	1	1	1	2	2	2	1	2	1	1	1	2	1	1	1	1	1	1	1	2	1	1	1	2	1	1	1	1	1	2	2	2	1	1	3	1	1	1	1	2	2	1	1	1	1	1	1	1	1	1	1	1	2	1	2	1	1	1	1	3	1	2	1	1	2	1	1	1	2	1	1	1	1	1	1	1	2	2	1	1	1	1	1	1	1	1	1	1	1	1	1	1	2	2	2	1	2	1	1	1	1	1	1	1	1	1	1	2	1	2	1	1	1	1	1	1	1	1	1	1	2	2	1	1	2	1	3	1	1	1	3	1	2	2	1	1	2	1	1	1	2	2	1	2	1	3	2	2	1	2	2	1	1	1	1	1	1	1	1	1	2	2	2	1	1	1	1	2	1	1	2	1	2	2	1	2	1	1	1	1	1	1	1	2	2	1	1	3	1	1	1	1	1	1	2	1	1	1	1	1	1	2	1	2	1	2	1	1	1	1	1	1	1	1	1	1	1	1	1	1	3	1	1	3	1	2	1	1	2	1	2	1	1	1	1	1	1	1	1	1	2	2	1	1	1	1	3	2	1	1	2	3	3	2	1	3	1	1	1	3	3	1	1	1	1	2	2	1	1	1	2	2	1	1	2	2	1	2	1	1	2	1	2	2	1	2	1	2	2	1	2	1	1	2	1	1	2	1	1	3	2	1	2	2	1
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-rsd_all				nan	nan	nan	nan	7.44464804268	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	7.95741393603	nan	nan	nan	nan	nan	nan	nan	nan	nan	48.9403897991	nan	nan	nan	16.1208244867	nan	nan	nan	nan	nan	nan	nan	nan	nan	40.0877914687	nan	nan	nan	nan	nan	7.42140723217	nan	nan	nan	nan	nan	nan	nan	19.0959428766	4.02320389621	nan	nan	nan	nan	69.0168382411	nan	nan	1.97751570629	16.520015012	2.31482831144	nan	nan	nan	21.6810898698	23.7716957344	22.6647952447	19.8082794922	19.450155988	20.9925495033	18.2702430845	nan	2.72928869643	83.8750434369	66.1115208021	15.9195461534	12.327067359	11.4879595591	16.6762667568	18.4675195476	24.2091693345	nan	nan	nan	nan	nan	17.7344591835	nan	67.2951594484	45.3693275302	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	18.0569928283	82.5359655168	13.7094342665	35.8845387519	nan	nan	nan	21.1375759205	8.22595249942	nan	118.829668852	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	11.3908653579	nan	nan	nan	nan	nan	nan	52.4546850431	64.6542320665	69.9637172766	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	4.27104151826	nan	nan	nan	nan	49.5160244993	48.798238213	14.6928677287	nan	3.01771169782	9.33270805809	9.67943434102	nan	nan	27.889163615	nan	16.926186088	18.843138211	17.9017894518	27.7786791924	nan	42.6188268794	47.9240327229	36.9848597427	6.03303380421	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	19.5297182399	7.5508492559	nan	nan	49.3222230024	54.0012447889	10.9290373533	nan	nan	nan	nan	nan	nan	nan	7.94927146684	14.8083403753	7.41875749154	nan	86.9301483343	10.8504009126	1.17351314152	3.16244801967	9.77354954635	nan	nan	43.0305641304	40.1236754058	nan	39.159997627	16.3979609129	1.77064748731	11.1158945725	nan	7.39240487285	3.93034038849	nan	22.6597583435	21.5085986808	nan	nan	nan	18.161770321	nan	nan	nan	37.3564208113	24.1904833516	nan	nan	nan	6.71427704204	95.4171906069	37.5732833962	nan	44.1753057556	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	1.19876978223	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	8.62218653668	9.52199838886	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	35.196717856	2.49191808531	nan	43.5910973504	1.49680585581	33.6735275234	36.3373577359	71.2213184954	30.3374016279	nan	30.4161520291	nan	3.55948067768	86.7040015113	7.67836657254	11.4781069696	nan	nan	nan	10.1404422858	5.25786822748	nan	nan	nan	45.9762459881	3.47779562592	17.9114968869	5.20570813961	nan	nan	nan	nan	1.40825215985	nan	nan	nan	nan	nan	nan	nan	nan	nan	7.89025710196	9.38847819881	nan	nan	nan	nan	nan	nan	nan	13.7537832697	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	45.991001402	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	5.91561167972	5.10573020313	20.7985986734	nan	21.1895774576	6.41298058833	nan	nan	34.6125608543	nan	nan	nan	1.88755999532	nan	nan	nan	nan	10.0478088132	nan	nan	24.7767044371	21.5029597711	nan	22.6364577418	nan	15.0691847886	18.4738253146	18.7744292593	nan	19.519680163	0.0529467383653	nan	nan	41.369834317	nan	nan	54.9747719465	nan	2.28569684908	8.46483030761	nan	nan	nan	nan	nan	115.888168985	3.45318353419	7.45327646678	9.06933731611	nan	nan	9.1063160092	4.56049895046	nan	nan	nan	53.880798905	13.3462599911	16.5935876239	56.64910323	10.377933875	28.8397338485	34.1141105497	nan	32.8626593953	26.8604356663	nan	nan	nan	nan	nan	51.5107717106	nan	nan	nan	nan	122.607168582	1.18309610182	nan	nan	22.0669957474	nan	37.0131107607	6.52261345997	nan	nan	2.50421912039	15.0290170282	nan	35.6193769015	nan	102.656631033	nan	nan	nan	nan	44.0856775386	70.2988569333	nan	16.5244495002	73.102223466	nan	nan	54.5733575443	53.5718778215	21.3569539301	nan	88.2091697639	nan	nan	nan	nan	nan	30.0717731103	57.8693574695	nan	69.4449658637	nan	nan	nan	nan	nan	55.0090249866	19.6571810851	83.3477196321	2.32332218064	97.1747763022	nan	nan	nan	nan	54.5667925427	5.67394894547	nan	nan	56.1699693307	nan	nan	nan	nan	10.1371171286	nan	nan	nan	78.6158089633	nan	10.7546314804	44.1563693073	nan	39.1769743465	42.247377757	52.5048895826	nan	19.7726572521	nan	nan	nan	11.4890418659	nan	11.0697864218	14.172729267	nan	nan	7.99444667464	34.1843657825	nan	nan	nan	nan	nan	nan	nan	74.5207719802	nan	47.4248894436	15.3776766182	nan	102.101698289	75.1583003629	nan	135.476827106	75.1378659304	nan	nan	80.846707215	nan	nan	nan	nan	76.1102952032	nan	nan	131.485464055	0.336377317388	nan	nan	90.3241326528	71.3271708359	nan	nan	nan	70.7888103378	69.2879762203	60.2771726052	nan	71.2479690375	nan	nan	nan	3.95663144034	nan	nan	nan	nan	nan	nan	nan	19.9313133099	nan	nan	nan	8.07096284963	nan	nan	nan	nan	nan	31.7348579632	128.057505633	19.2756863773	nan	nan	123.569970873	nan	nan	nan	nan	13.0271699446	3.65986616262	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	54.3090001359	nan	27.4263075654	nan	nan	nan	nan	88.457990664	nan	46.5527783151	nan	nan	8.09236827371	nan	nan	nan	72.1146717457	nan	nan	nan	nan	nan	nan	nan	34.187183072	32.5889121734	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	15.9568997856	78.4954922279	10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2274414	0.0	0.0	0.0	0.0	33841.5495567	33583.9862155	0.0	30602.8643881	0.0	51473.8918527	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	21959.403428	0.0	0.0	0.0	0.0	164054.203755	0.0	34300.0228508	0.0	0.0	29778.2274353	0.0	67241.2769253	0.0	146305.931791	101036.592634	21652.2562272	32429.3978687	0.0	32222.7536273	0.0	0.0	175021.826208	38369.6506696	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	22986.0348947	0.0	40652.6881582	125281.944211	333543.300996	0.0	0.0	0.0	88068.3863002	0.0	32840.781529	0.0	142280.768973	26541.6538086	0.0	0.0	0.0	42199.8421117	78079.7740385	0.0	108447.628663	0.0	26641.51653	24296.9988267	0.0	17470.7663011	22751.9079348	0.0	0.0	0.0	26518.3509866	40548.6571836	0.0	0.0	19823.9536167	18431.7802843	18001.3932693	43727.875719	18000.4803421	0.0	0.0	67230.8705572	0.0	0.0	0.0	0.0	46093.6097041	69388.9127175	40983.1330987	32112.2245843	0.0	24770.5678568	22212.354832	19148.4904313	154255.921804	0.0	1063613.37901	31026.9425061	225684.520175	0.0	62285.5514108	19884.966638	0.0	17934.411345	19090.4885045	19432.6256844	19107.3232944	0.0	0.0	25360.8145032	0.0	203560.854567	60629.8506611	41419.4428085	0.0	29693.7763923	26134.7972256	19277.6781496	23161.9888822	0.0	0.0	40219.9194211	0.0	29817.9132111	32708.1322116	0.0	84717.5342548	0.0	27774.1763822	0.0	0.0	18993.7802233	0.0	0.0	24053.9997747	24988.0221354	0.0	16436.9423043	16386.0413452	0.0	0.0	22073.4002654	0.0	0.0	0.0	20138.1137925	0.0	0.0	46858.1088491	0.0	0.0	17052.9176137	21167.997496	0.0	34787.1693209	23414.4755108	37938.5930489	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	19106.9090169	0.0	0.0	0.0	0.0	0.0	37461.5310664	0.0	0.0	14362.0373372	0.0	21314.306265	0.0	0.0	71192.1812984	0.0	20811.2708312	15141.0796091	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	15828.4004729	23398.6343744	0.0	0.0	0.0	0.0	21457.447925	14286.5203961	0.0	0.0	19027.5640233	17211.9608373	460295.080929	15702.8214495	0.0	128780.554537	0.0	0.0	0.0	17420.2956417	18348.7977543	0.0	0.0	0.0	24021.2551677	717237.77353	321793.089844	32279.7720572	40430.6411822	16052.603766	196613.679988	59718.0442291	0.0	30108.7345545	47967.01163	3177844.60844	0.0	102904.264724	0.0	110199.694511	0.0	15259.9590553	22302.9383347	988971.083066	0.0	33641.0828889	0.0	231091.970987	121895.147887	0.0	59537.7919504	0.0	24667.618235	18404.367872	74641.0067358	23476.3904414	14867.3283224	37019.7582799	34291.0102956	171580.192608	56541.5175948	16201.0999098	392976.702791	107441.149189	34247.4257437
\ No newline at end of file
diff -r 62bcdba9ddcc -r 79fdd9fc8eba test-data/peak_matrix_as_bf_sf_mv.txt
--- a/test-data/peak_matrix_as_bf_sf_mv.txt	Tue Feb 27 14:03:10 2018 -0500
+++ b/test-data/peak_matrix_as_bf_sf_mv.txt	Wed May 30 09:19:03 2018 -0400
@@ -1,3 +1,3 @@
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+batch04_S01_rep01_247_2_248_3_249	75661.9152344	29157.5138579	69397.7929688	171352.920833	33188.405136	32625.4074508	47105.5606771	32450.8670573	101834.059896	45483.2532552	37785.3966146	87564.9338542	449483.561458	2035922.99167	20506869.8	2360257.82083	51068.0911459	80324.7497396	275370.386979	36743.0329427	126032.773438	40203.8609375	148157.292969	571837.39375	53255.8532986	61401.8567708	40844.759375	58446.9075521	399714.763542	33801.1007161	35140.682487	91467.1914063	46092.2585937	59685.0216146	75417.1070313	27727.3874024	67655.2373698	421695.090625	53353.3583333	30312.1079055	176395.807813	39563.0611545	92778.5830729	368217.978125	2589303.19167	39939.0320963	50918.9657552	142174.205729	861803.833333	71481.8338542	59911.4585937	343706.757292	29198.8929986	88914.2354166	136740.753646	85044.7835938	40625.5928819	314133.819287	30864.4441821	91214.1764915	48946.6908045	79060.7282631	3998792.83144	350395.191367	28647.7264323	27727.4832012	231284.080374	111374.140684	950393.925663	69493.0027423	47600.7256846	110465.472577	157527.609217	67019.9925525	83479.8228378	63670.523911	628735.534091	41198.208067	59509.2936691	109159.824712	47887.6653153	29075.0419116	71806.3585365	156071.826665	68531.7921106	57407.8662603	376787.278014	284592.552715	31272.8382162	35768.1149138	163282.826468	64573.8773378	428675.28125	42556.8198538	28555.8812397	540260.536616	8535363.9053	637690.522254	53398.3073805	99238.2958689	604875.090751	27713.4003581	45013.9758424	85621.5451783	34503.327617	27492.0458985	50703.6310369	27876.122526	34248.8084902	274465.635496	73848.1836727	868657.55161	100127.096335	107189.000769	74855.1697246	44218.4837536	78263.7571812	22698.1600329	34816.5754464	313890.845387	37872.1027871	31850.4178075	137319.952901	1254363.10516	138911.806386	22508.9044922	96194.9694569	71786.9004216	83165.9085937	22083.0000543	44524.1178386	53219.1476252	563467.506151	61452.0262835	121461.770077	22174.7870939	234800.567807	37164.1391245	45122.2787822	434254.057589	37092.6867095	25167.2324755	24355.0742513	163861.212078	23160.4090286	45369.4699901	42101.4501798	105624.266332	63188.0389819	52955.5375868	25661.128635	28190.3489056	45349.4178076	52889.2135107	37808.0831721	43880.4109995	574059.297421	57604.3296999	78127.0883308	42197.1028739	41416.6056052	110157.383321	35188.0299851	133851.823128	1030898.46736	179443.65744	74687.6008309	9470685.43492	83400.0044767	144474.419469	1424719.79246	475144.365873	108507.602058	83007.3273065	83981.0337054	29854.6649034	29646.7611002	118081.919841	152571.8	87342.6934896	33841.5495567	33583.9862155	21959.403428	34300.0228508	29778.2274353	146305.931791	175021.826208	38369.6506696	125281.944211	333543.300996	78079.7740385	108447.628663	40548.6571836	18431.7802843	69388.9127175	24770.5678568	22212.354832	154255.921804	1063613.37901	31026.9425061	225684.520175	62285.5514108	19884.966638	203560.854567	60629.8506611	23161.9888822	40219.9194211	29817.9132111	32708.1322116	84717.5342548	24053.9997747	24988.0221354	20138.1137925	21167.997496	34787.1693209	37938.5930489	21314.306265	71192.1812984	20811.2708312	15828.4004729	14286.5203961	717237.77353	321793.089844	196613.679988	59718.0442291	47967.01163	3177844.60844	102904.264724	22302.9383347	988971.083066	231091.970987	121895.147887	59537.7919504	18404.367872	14867.3283224	392976.702791	107441.149189
\ No newline at end of file
diff -r 62bcdba9ddcc -r 79fdd9fc8eba test-data/peak_matrix_as_bf_sf_mz.txt
--- a/test-data/peak_matrix_as_bf_sf_mz.txt	Tue Feb 27 14:03:10 2018 -0500
+++ b/test-data/peak_matrix_as_bf_sf_mz.txt	Wed May 30 09:19:03 2018 -0400
@@ -1,238 +1,238 @@
 mz	batch04_B02_rep01_301_2_302_3_303	batch04_QC17_rep01_262_2_263_3_264	batch04_S01_rep01_247_2_248_3_249
-98.9954998691	0.0	98.9955011572	98.9954985809
-104.106972509	0.0	104.106975455	104.106969562
-112.052301283	0.0	112.052301296	112.05230127
-118.086253653	0.0	118.086252982	118.086254325
+98.99549986905001	0.0	98.9955011572	98.9954985809
+104.10697250850001	0.0	104.106975455	104.106969562
+112.05230128299999	0.0	112.052301296	112.05230127
+118.0862536535	0.0	118.086252982	118.086254325
 123.013845316	0.0	123.013844104	123.013846528
-128.010843476	0.0	128.010844488	128.010842465
-128.994858336	0.0	128.994863945	128.994852728
-131.009836808	0.0	131.009832759	131.009840858
-131.010517825	0.0	131.010516364	131.010519286
-131.018942036	0.0	131.018942282	131.018941789
-132.074583988	0.0	132.074579642	132.074588333
-132.075008963	0.0	132.075002532	132.075015393
-132.075567318	0.0	132.075557576	132.075577059
+128.01084347649999	0.0	128.010844488	128.010842465
+128.9948583365	0.0	128.994863945	128.994852728
+131.00983680849998	0.0	131.009832759	131.009840858
+131.01051782500002	0.0	131.010516364	131.010519286
+131.0189420355	0.0	131.018942282	131.018941789
+132.0745839875	0.0	132.074579642	132.074588333
+132.07500896250002	0.0	132.075002532	132.075015393
+132.0755673175	0.0	132.075557576	132.075577059
 132.076101717	0.0	132.076094335	132.076109099
-132.076671348	0.0	132.076676827	132.07666587
-132.077202011	0.0	132.077211554	132.077192467
+132.07667134849999	0.0	132.076676827	132.07666587
+132.0772020105	0.0	132.077211554	132.077192467
 132.077992635	0.0	132.078018439	132.077966831
-132.10124611	0.0	132.101242393	132.101249828
-132.101899697	132.101865173	132.101924406	132.101909513
-133.073124466	0.0	133.073117049	133.073131884
-133.073801709	0.0	133.073804591	133.073798826
-133.078935658	0.0	133.078935168	133.078936148
-133.079460494	0.0	133.079451196	133.079469793
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+132.1012461105	0.0	132.101242393	132.101249828
+132.10189969733332	132.101865173	132.101924406	132.101909513
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+133.0738017085	0.0	133.073804591	133.073798826
+133.07893565799998	0.0	133.078935168	133.078936148
+133.07946049449998	0.0	133.079451196	133.079469793
+133.08011868699998	0.0	133.080125021	133.080112353
+133.0806325275	0.0	133.080636658	133.080628397
 134.080996946	0.0	134.081009691	134.080984201
 135.002862414	0.0	135.002874823	135.002850005
-136.047429382	0.0	136.047435694	136.04742307
-136.048119883	136.048097088	136.048141627	136.048120933
-136.048697166	0.0	136.048698803	136.048695528
-136.061765976	0.0	136.061774451	136.061757502
+136.04742938200002	0.0	136.047435694	136.04742307
+136.04811988266667	136.048097088	136.048141627	136.048120933
+136.04869716550002	0.0	136.048698803	136.048695528
+136.0617659765	0.0	136.061774451	136.061757502
 136.940051855	0.0	136.940056932	136.940046778
-137.029491761	0.0	137.029493493	137.029490029
+137.02949176099997	0.0	137.029493493	137.029490029
 137.045773739	137.045758008	137.045788473	137.045774736
-139.015603989	0.0	139.015604335	139.015603644
-140.066921905	0.0	140.066931939	140.066911871
+139.0156039895	0.0	139.015604335	139.015603644
+140.06692190500002	0.0	140.066931939	140.066911871
 140.067478979	0.0	140.067487509	140.067470449
 140.06819156	0.0	140.068178564	140.068204556
-144.101942195	0.0	144.101934972	144.101949419
+144.1019421955	0.0	144.101934972	144.101949419
 146.116764318	0.0	146.116774273	146.116754363
 146.117593543	0.0	146.117588213	146.117598873
-146.165212548	0.0	146.165208908	146.165216189
-147.075026099	0.0	147.075041061	147.075011136
-147.07563403	0.0	147.075640974	147.075627085
-147.076381496	0.0	147.076393273	147.076369718
-147.112840746	0.0	147.11284157	147.112839922
-148.002470297	0.0	148.002474814	148.002465779
+146.1652125485	0.0	146.165208908	146.165216189
+147.07502609850002	0.0	147.075041061	147.075011136
+147.0756340295	0.0	147.075640974	147.075627085
+147.07638149550002	0.0	147.076393273	147.076369718
+147.11284074600002	0.0	147.11284157	147.112839922
+148.0024702965	0.0	148.002474814	148.002465779
 148.003082516	0.0	148.003081907	148.003083125
-148.003895413	0.0	148.003901655	148.00388917
-148.004529246	0.0	148.004525817	148.004532676
+148.00389541250001	0.0	148.003901655	148.00388917
+148.0045292465	0.0	148.004525817	148.004532676
 148.059628878	0.0	148.059637644	148.059620112
-148.060463029	0.0	148.060456122	148.060469937
-148.061104039	0.0	148.061101311	148.061106768
-148.079812778	0.0	148.079810724	148.079814832
-150.976840465	0.0	150.976839488	150.976841441
-152.022107353	0.0	152.022106709	152.022107997
+148.0604630295	0.0	148.060456122	148.060469937
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+150.97684046450001	0.0	150.976839488	150.976841441
+152.02210735300002	0.0	152.022106709	152.022107997
 156.041293988	0.0	156.041288332	156.041299644
-156.04209741	0.0	156.042085861	156.04210896
-156.076741027	0.0	156.076742825	156.076739228
-160.133198751	0.0	160.133196834	160.133200667
-161.128432541	0.0	161.128430024	161.128435059
-162.110690219	0.0	162.110681697	162.110698742
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\ No newline at end of file
diff -r 62bcdba9ddcc -r 79fdd9fc8eba test-data/peak_matrix_as_bf_sf_mz_compr.txt
--- a/test-data/peak_matrix_as_bf_sf_mz_compr.txt	Tue Feb 27 14:03:10 2018 -0500
+++ b/test-data/peak_matrix_as_bf_sf_mz_compr.txt	Wed May 30 09:19:03 2018 -0400
@@ -6,7 +6,7 @@
 96.0477230462	1	1.0	1.0	nan	0	0	0	96.0477230462	0.0	0.0
 97.0647529114	1	1.0	1.0	nan	0	0	0	97.0647529114	0.0	0.0
 97.1011384065	1	1.0	1.0	nan	0	0	0	97.1011384065	0.0	0.0
-98.9954998691	2	2.0	1.0	7.44464804268	1	1	1	0.0	98.9955011572	98.9954985809
+98.99549986905001	2	2.0	1.0	7.444648042681762	1	1	1	0.0	98.9955011572	98.9954985809
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@@ -17,7 +17,7 @@
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@@ -27,11 +27,11 @@
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-114.066170487	3	3.0	1.0	16.1208244867	0	0	0	114.066147242	114.066180502	114.066183717
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@@ -41,13 +41,13 @@
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@@ -55,47 +55,47 @@
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-134.080996946	2	2.0	1.0	17.7344591835	1	1	1	0.0	134.081009691	134.080984201
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-134.996465421	2	2.0	1.0	67.2951594484	0	0	0	134.996437989	134.996492853	0.0
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+135.002862414	2	2.0	1.0	45.36932753019347	1	1	1	0.0	135.002874823	135.002850005
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@@ -107,17 +107,17 @@
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@@ -129,16 +129,16 @@
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@@ -162,31 +162,31 @@
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 557.073628299	1	1.0	1.0	nan	1	0	0	0.0	0.0	557.073628299
-557.095013624	2	2.0	1.0	5.91595417927	1	1	1	0.0	557.094969128	557.09505812
+557.095013624	2	2.0	1.0	5.9159541792713	1	1	1	0.0	557.094969128	557.09505812
 557.501974295	1	1.0	1.0	nan	1	0	0	0.0	0.0	557.501974295
 558.505341074	1	1.0	1.0	nan	1	0	0	0.0	0.0	558.505341074
-559.151213812	2	2.0	1.0	8.1702431679	1	1	1	0.0	559.151178004	559.151249619
+559.1512138115	2	2.0	1.0	8.170243167899272	1	1	1	0.0	559.151178004	559.151249619
 559.517386251	1	1.0	1.0	nan	1	0	0	0.0	0.0	559.517386251
 561.535808365	1	1.0	1.0	nan	1	0	0	0.0	0.0	561.535808365
-563.551455252	3	3.0	1.0	80.1044800076	0	0	0	563.551695407	563.551453851	563.551216499
-564.554937793	2	2.0	1.0	27.0438243238	0	0	0	564.555085478	0.0	564.554790108
+563.5514552523333	3	3.0	1.0	80.1044800076335	0	0	0	563.551695407	563.551453851	563.551216499
+564.554937793	2	2.0	1.0	27.04382432383437	0	0	0	564.555085478	0.0	564.554790108
 569.345464898	1	1.0	1.0	nan	1	0	0	0.0	0.0	569.345464898
-569.363651248	2	2.0	1.0	70.3737259764	1	1	1	0.0	569.363794088	569.363508407
-570.367404206	2	2.0	1.0	69.4982507289	1	1	1	0.0	570.367451	570.367357412
-571.361841884	1	1.0	1.0	nan	1	0	0	0.0	0.0	571.361841884
+569.3636512475	2	2.0	1.0	70.37372597644634	1	1	1	0.0	569.363794088	569.363508407
+570.367404206	2	2.0	1.0	69.49825072887477	1	1	1	0.0	570.367451	570.367357412
+571.361841884	1	1.0	1.0	nan	1	0	0	0.0	0.0	571.361841884
\ No newline at end of file
diff -r 62bcdba9ddcc -r 79fdd9fc8eba test-data/peak_matrix_as_bf_sf_within.txt
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/peak_matrix_as_bf_sf_within.txt	Wed May 30 09:19:03 2018 -0400
@@ -0,0 +1,4 @@
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\ No newline at end of file
diff -r 62bcdba9ddcc -r 79fdd9fc8eba test-data/peak_matrix_as_bf_sf_within_compr.txt
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/peak_matrix_as_bf_sf_within_compr.txt	Wed May 30 09:19:03 2018 -0400
@@ -0,0 +1,11 @@
+mz	missing 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\ No newline at end of file
diff -r 62bcdba9ddcc -r 79fdd9fc8eba test-data/peak_matrix_as_mz.txt
--- a/test-data/peak_matrix_as_mz.txt	Tue Feb 27 14:03:10 2018 -0500
+++ b/test-data/peak_matrix_as_mz.txt	Wed May 30 09:19:03 2018 -0400
@@ -1,4 +1,4 @@
-mz	95.0854867136	96.0477230462	97.0647529114	97.1011384065	98.9954998691	99.0804011767	101.003118017	101.059284262	101.059667337	101.777300408	101.781524007	102.127686063	102.970223555	103.038951206	103.075318834	104.106972509	105.003234195	105.090964311	107.070230246	107.085062328	107.085488315	109.100703053	109.101137314	111.08040236	111.116786045	112.052301283	113.059666808	113.096051485	114.065677969	114.066170487	114.091302909	115.036557299	115.075318293	115.111705216	116.070599012	116.985382141	116.98587154	117.054583395	117.090968646	118.086253653	119.085485311	120.980267261	120.980786531	121.00756219	121.064754009	123.013845316	123.055288913	123.116788199	125.095487802	125.096051948	126.021940468	127.075321735	127.111706998	128.010843476	128.994858336	129.090369007	129.090974735	129.127358602	130.049222294	130.049863468	130.964513436	130.965138358	131.009836808	131.010517825	131.018942036	131.070233883	131.085482301	131.106615399	132.074583988	132.075008963	132.075567318	132.076101717	132.076671348	132.077202011	132.077992635	132.078371418	132.10124611	132.101899697	133.034572295	133.073124466	133.073801709	133.078935658	133.079460494	133.080118687	133.080632528	133.085244134	133.08588551	133.100506766	133.101138251	133.105278546	134.080996946	134.986830233	134.996465421	135.002862414	135.044024062	135.079258734	135.079764229	135.08038938	135.08097732	135.100884718	135.101532646	135.116137118	135.116787748	136.021508699	136.04691347	136.047429382	136.048119883	136.048697166	136.061765976	136.073251744	136.083096309	136.083761924	136.940051855	137.029491761	137.045065286	137.045773739	137.056596193	137.057269511	137.058997556	137.059672042	137.094876372	137.095391733	137.096043901	137.096633067	137.132444496	138.091309182	138.099413241	139.015603989	139.036530811	139.072917036	139.074630285	139.075322774	139.111014214	139.111701664	140.066921905	140.067478979	140.06819156	140.068751041	140.106954463	140.115061283	141.015855767	141.05218138	141.071577375	141.087852717	141.088567109	141.090252262	141.090971445	141.127355825	142.047430796	142.086228559	142.121881522	142.122604088	142.158992032	142.94808538	143.001525805	143.085493568	143.10588682	143.106624835	143.988083681	144.080733504	144.101942195	144.980789437	145.047092142	145.101135997	145.122261684	146.116764318	146.117593543	146.165212548	146.99644084	147.075026099	147.07563403	147.076381496	147.076979975	147.080407767	147.112840746	147.116791771	148.002470297	148.003082516	148.003895413	148.004529246	148.059020674	148.059628878	148.060463029	148.061104039	148.079812778	149.002478676	149.022503043	149.023281113	149.044827912	149.059672206	149.063819045	149.09606266	149.132443185	149.999720327	150.975955392	150.976840465	152.022107353	152.106952838	155.106635915	156.041293988	156.04209741	156.076741027	156.989754618	157.045485596	158.040247352	158.117532287	158.921989272	159.027720801	159.065165762	160.133198751	161.128432541	162.110690219	162.111590644	162.112377858	162.113089295	163.045136563	163.114854206	163.115822095	163.148118188	163.976056014	163.976865689	163.977780102	165.97362311	165.975937112	166.086251818	166.950728597	167.021727034	167.104235181	168.00575923	169.058369029	169.122302355	170.031627109	170.032608751	170.117542392	171.036000371	171.10155643	172.03075001	172.131391412	172.132189987	172.133058362	172.984687975	173.080840757	173.132465407	173.136536346	174.112454069	174.89594473	175.001680018	175.118963541	175.148114856	176.102979229	177.134608611	179.128465135	180.099485034	181.064781256	183.135542334	184.09440398	186.1488452	187.125928194	188.126027407	188.126982017	188.127958364	189.052399827	189.112130373	189.131443965	189.159733638	191.040098978	191.104244442	191.106642836	191.139020145	191.143026735	191.164168196	193.001987153	193.107326275	193.122293797	193.158657464	194.112909063	194.113937225	194.115013807	194.162041956	195.017597191	195.099164614	195.118489509	195.122688638	195.137953706	195.174329384	196.093111731	196.094365648	196.133188662	196.954419421	197.078436232	197.151198232	197.15359074	198.084934735	198.11005386	198.148826946	198.185230589	199.094085221	199.130443878	199.13285878	199.167928041	199.169182065	199.20565281	200.067015416	200.068336832	200.128114646	200.163168249	200.164421525	200.172596426	200.200872992	201.071723083	201.112137504	201.148516239	201.167861307	201.18489544	201.932346714	201.933718688	202.066511789	202.143739474	202.180178742	203.040079527	203.051224356	203.052583123	203.139034837	203.931844481	204.04214677	204.056007584	204.120741567	204.121476777	204.122881675	204.123967408	205.055741463	205.08591946	205.097182566	205.122293634	205.124995123	205.126369088	205.154711374	205.158691684	205.195062356	206.05531063	206.1273128	207.014274578	207.078225213	207.101570295	207.137952093	207.159083317	207.174339207	207.988550264	207.998291404	208.09441105	208.130805683	208.169561137	209.117232919	209.153584829	209.172945534	209.177406022	209.189980267	210.087340882	210.089121447	210.1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\ No newline at end of file
diff -r 62bcdba9ddcc -r 79fdd9fc8eba test-data/peak_matrix_as_mz_compr.txt
--- a/test-data/peak_matrix_as_mz_compr.txt	Tue Feb 27 14:03:10 2018 -0500
+++ b/test-data/peak_matrix_as_mz_compr.txt	Wed May 30 09:19:03 2018 -0400
@@ -1,9 +1,9 @@
-mz	missing 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 present				1	1	1	1	2	1	1	1	1	1	1	1	1	1	1	2	1	1	1	1	1	1	1	1	1	2	1	1	1	3	1	1	1	1	1	1	1	1	1	2	1	1	1	1	1	2	1	1	1	1	1	1	1	2	2	1	1	1	1	3	1	1	2	2	2	1	1	1	2	2	2	2	2	2	2	1	2	3	3	2	2	2	2	2	2	1	1	1	1	1	2	1	2	2	1	1	1	1	1	1	1	1	1	1	1	2	3	2	2	1	1	1	2	2	1	3	1	1	1	1	1	1	1	1	1	1	1	2	1	1	1	1	1	1	2	2	2	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	2	1	1	1	1	2	2	2	1	2	2	2	1	1	2	1	2	2	2	2	1	2	2	2	2	1	1	1	1	1	1	1	1	1	1	2	2	1	1	2	2	2	1	1	1	1	1	1	1	2	2	2	1	3	2	2	2	2	1	1	2	2	1	2	2	2	2	1	2	2	1	2	2	1	1	1	2	1	1	1	2	2	1	1	1	2	2	2	1	2	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	2	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	2	2	1	1	1	1	1	1	1	1	1	1	1	2	2	1	2	2	2	2	3	2	1	2	1	2	3	2	2	1	1	1	2	2	1	1	1	2	2	2	2	1	1	1	1	2	1	1	1	1	1	1	1	1	1	2	2	1	1	1	1	1	1	1	2	1	1	1	1	1	1	1	1	1	1	2	1	1	1	1	1	1	1	1	1	1	1	1	2	2	2	1	2	2	1	1	2	1	1	1	2	1	1	1	1	2	1	1	2	2	1	2	1	2	2	2	1	2	2	1	1	2	1	1	2	1	2	2	1	1	1	1	1	2	2	2	2	1	1	2	2	1	1	1	3	2	2	3	2	2	2	1	2	3	1	1	1	1	1	3	1	1	1	1	3	2	1	1	2	1	2	2	1	1	2	2	1	2	1	3	1	1	1	1	2	3	1	2	3	1	1	2	2	2	1	3	1	1	1	1	1	2	3	1	3	1	1	1	1	1	2	2	3	2	2	1	1	1	1	2	2	1	1	2	1	1	1	1	2	1	1	1	3	1	2	3	1	2	3	2	1	2	1	1	1	2	1	2	2	1	1	2	2	1	1	1	1	1	1	1	2	1	3	2	1	2	2	1	3	2	1	1	2	1	1	1	1	2	1	1	3	2	1	1	2	2	1	1	1	2	2	2	1	2	1	1	1	2	1	1	1	1	1	1	1	2	1	1	1	2	1	1	1	1	1	2	2	2	1	1	3	1	1	1	1	2	2	1	1	1	1	1	1	1	1	1	1	1	2	1	2	1	1	1	1	3	1	2	1	1	2	1	1	1	2	1	1	1	1	1	1	1	2	2	1	1	1	1	1	1	1	1	1	1	1	1	1	1	2	2	2	1	2	1	1	1	1	1	1	1	1	1	1	2	1	2	1	1	1	1	1	1	1	1	1	1	2	2	1	1	2	1	3	1	1	1	3	1	2	2	1	1	2	1	1	1	2	2	1	2	1	3	2	2	1	2	2	1	1	1	1	1	1	1	1	1	2	2	2	1	1	1	1	2	1	1	2	1	2	2	1	2	1	1	1	1	1	1	1	2	2	1	1	3	1	1	1	1	1	1	2	1	1	1	1	1	1	2	1	2	1	2	1	1	1	1	1	1	1	1	1	1	1	1	1	1	3	1	1	3	1	2	1	1	2	1	2	1	1	1	1	1	1	1	1	1	2	2	1	1	1	1	3	2	1	1	2	3	3	2	1	3	1	1	1	3	3	1	1	1	1	2	2	1	1	1	2	2	1	1	2	2	1	2	1	1	2	1	2	2	1	2	1	2	2	1	2	1	1	2	1	1	2	1	1	3	2	1	2	2	1
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-rsd_all				nan	nan	nan	nan	7.44464804268	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	7.95741393603	nan	nan	nan	nan	nan	nan	nan	nan	nan	48.9403897991	nan	nan	nan	16.1208244867	nan	nan	nan	nan	nan	nan	nan	nan	nan	40.0877914687	nan	nan	nan	nan	nan	7.42140723217	nan	nan	nan	nan	nan	nan	nan	19.0959428766	4.02320389621	nan	nan	nan	nan	69.0168382411	nan	nan	1.97751570629	16.520015012	2.31482831144	nan	nan	nan	21.6810898698	23.7716957344	22.6647952447	19.8082794922	19.450155988	20.9925495033	18.2702430845	nan	2.72928869643	83.8750434369	66.1115208021	15.9195461534	12.327067359	11.4879595591	16.6762667568	18.4675195476	24.2091693345	nan	nan	nan	nan	nan	17.7344591835	nan	67.2951594484	45.3693275302	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	18.0569928283	82.5359655168	13.7094342665	35.8845387519	nan	nan	nan	21.1375759205	8.22595249942	nan	118.829668852	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	11.3908653579	nan	nan	nan	nan	nan	nan	52.4546850431	64.6542320665	69.9637172766	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	4.27104151826	nan	nan	nan	nan	49.5160244993	48.798238213	14.6928677287	nan	3.01771169782	9.33270805809	9.67943434102	nan	nan	27.889163615	nan	16.926186088	18.843138211	17.9017894518	27.7786791924	nan	42.6188268794	47.9240327229	36.9848597427	6.03303380421	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	19.5297182399	7.5508492559	nan	nan	49.3222230024	54.0012447889	10.9290373533	nan	nan	nan	nan	nan	nan	nan	7.94927146684	14.8083403753	7.41875749154	nan	86.9301483343	10.8504009126	1.17351314152	3.16244801967	9.77354954635	nan	nan	43.0305641304	40.1236754058	nan	39.159997627	16.3979609129	1.77064748731	11.1158945725	nan	7.39240487285	3.93034038849	nan	22.6597583435	21.5085986808	nan	nan	nan	18.161770321	nan	nan	nan	37.3564208113	24.1904833516	nan	nan	nan	6.71427704204	95.4171906069	37.5732833962	nan	44.1753057556	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	1.19876978223	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	8.62218653668	9.52199838886	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	35.196717856	2.49191808531	nan	43.5910973504	1.49680585581	33.6735275234	36.3373577359	71.2213184954	30.3374016279	nan	30.4161520291	nan	3.55948067768	86.7040015113	7.67836657254	11.4781069696	nan	nan	nan	10.1404422858	5.25786822748	nan	nan	nan	45.9762459881	3.47779562592	17.9114968869	5.20570813961	nan	nan	nan	nan	1.40825215985	nan	nan	nan	nan	nan	nan	nan	nan	nan	7.89025710196	9.38847819881	nan	nan	nan	nan	nan	nan	nan	13.7537832697	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	45.991001402	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	5.91561167972	5.10573020313	20.7985986734	nan	21.1895774576	6.41298058833	nan	nan	34.6125608543	nan	nan	nan	1.88755999532	nan	nan	nan	nan	10.0478088132	nan	nan	24.7767044371	21.5029597711	nan	22.6364577418	nan	15.0691847886	18.4738253146	18.7744292593	nan	19.519680163	0.0529467383653	nan	nan	41.369834317	nan	nan	54.9747719465	nan	2.28569684908	8.46483030761	nan	nan	nan	nan	nan	115.888168985	3.45318353419	7.45327646678	9.06933731611	nan	nan	9.1063160092	4.56049895046	nan	nan	nan	53.880798905	13.3462599911	16.5935876239	56.64910323	10.377933875	28.8397338485	34.1141105497	nan	32.8626593953	26.8604356663	nan	nan	nan	nan	nan	51.5107717106	nan	nan	nan	nan	122.607168582	1.18309610182	nan	nan	22.0669957474	nan	37.0131107607	6.52261345997	nan	nan	2.50421912039	15.0290170282	nan	35.6193769015	nan	102.656631033	nan	nan	nan	nan	44.0856775386	70.2988569333	nan	16.5244495002	73.102223466	nan	nan	54.5733575443	53.5718778215	21.3569539301	nan	88.2091697639	nan	nan	nan	nan	nan	30.0717731103	57.8693574695	nan	69.4449658637	nan	nan	nan	nan	nan	55.0090249866	19.6571810851	83.3477196321	2.32332218064	97.1747763022	nan	nan	nan	nan	54.5667925427	5.67394894547	nan	nan	56.1699693307	nan	nan	nan	nan	10.1371171286	nan	nan	nan	78.6158089633	nan	10.7546314804	44.1563693073	nan	39.1769743465	42.247377757	52.5048895826	nan	19.7726572521	nan	nan	nan	11.4890418659	nan	11.0697864218	14.172729267	nan	nan	7.99444667464	34.1843657825	nan	nan	nan	nan	nan	nan	nan	74.5207719802	nan	47.4248894436	15.3776766182	nan	102.101698289	75.1583003629	nan	135.476827106	75.1378659304	nan	nan	80.846707215	nan	nan	nan	nan	76.1102952032	nan	nan	131.485464055	0.336377317388	nan	nan	90.3241326528	71.3271708359	nan	nan	nan	70.7888103378	69.2879762203	60.2771726052	nan	71.2479690375	nan	nan	nan	3.95663144034	nan	nan	nan	nan	nan	nan	nan	19.9313133099	nan	nan	nan	8.07096284963	nan	nan	nan	nan	nan	31.7348579632	128.057505633	19.2756863773	nan	nan	123.569970873	nan	nan	nan	nan	13.0271699446	3.65986616262	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	54.3090001359	nan	27.4263075654	nan	nan	nan	nan	88.457990664	nan	46.5527783151	nan	nan	8.09236827371	nan	nan	nan	72.1146717457	nan	nan	nan	nan	nan	nan	nan	34.187183072	32.5889121734	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	15.9568997856	78.4954922279	10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0	338.341734428	0.0	0.0	0.0	0.0	346.047033578	348.070427363	0.0	348.266379527	0.0	350.25403947	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	366.203836216	0.0	0.0	0.0	0.0	368.219386882	0.0	369.22284541	0.0	0.0	370.052050654	0.0	370.247962938	0.0	371.326452665	372.206249404	372.245046935	372.329856912	0.0	374.203335574	0.0	0.0	376.297232822	377.300657538	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	384.206323385	0.0	385.316989323	386.025874125	386.221768966	0.0	0.0	0.0	387.225262028	0.0	387.332638188	0.0	388.218983046	389.222358733	0.0	0.0	0.0	393.358426888	394.279817501	0.0	395.337633663	0.0	396.308075518	396.341053427	0.0	398.020297889	398.032874064	0.0	0.0	0.0	399.357767697	400.157203497	0.0	0.0	407.293469086	408.007897242	408.020525014	408.308085494	408.951037638	0.0	0.0	409.161823425	0.0	0.0	0.0	0.0	411.332645717	413.348274197	413.373403903	414.006828619	0.0	415.156868323	416.084280734	423.981765103	424.281866106	0.0	425.135298418	425.285292567	426.138881798	0.0	427.13386107	427.142901643	0.0	429.262746682	435.061172652	435.330083765	435.988638501	0.0	0.0	443.233520419	0.0	445.248985812	445.98895613	446.252511258	0.0	450.329735454	451.962532082	453.068896429	453.112601976	0.0	0.0	454.04005321	0.0	457.042996949	461.332795944	0.0	461.962809831	0.0	467.23109072	0.0	0.0	469.055315064	0.0	0.0	469.410670251	470.013885023	0.0	471.061108818	471.13283571	0.0	0.0	473.01699606	0.0	0.0	0.0	476.227413736	0.0	0.0	479.335260946	0.0	0.0	483.017348311	483.075303021	0.0	483.944760702	484.311374779	484.323911019	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	499.918623596	0.0	0.0	0.0	0.0	0.0	515.413178882	0.0	0.0	516.416626946	0.0	517.396435931	0.0	0.0	518.250004364	0.0	519.253388986	519.295091303	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	527.183407917	531.408057826	0.0	0.0	0.0	0.0	532.439740342	533.249741237	0.0	0.0	535.520104813	537.378500181	537.394422417	537.535644564	0.0	538.398326377	0.0	0.0	0.0	539.391034626	539.401891838	0.0	0.0	0.0	545.40662442	545.423134445	546.42664666	547.419387343	547.430522439	547.460189893	548.285476369	549.289092376	0.0	550.360250738	553.348894953	553.367647289	0.0	553.376284114	0.0	553.388587287	0.0	554.278572222	554.35522838	554.371478456	0.0	554.393049185	0.0	555.366533294	555.374371686	0.0	556.370106746	0.0	557.073628299	557.09505812	557.501974295	558.505341074	559.151249619	559.517386251	561.535808365	563.551216499	564.554790108	569.345464898	569.363508407	570.367357412	571.361841884
\ No newline at end of file
diff -r 62bcdba9ddcc -r 79fdd9fc8eba test-data/peak_matrix_as_t.txt
--- a/test-data/peak_matrix_as_t.txt	Tue Feb 27 14:03:10 2018 -0500
+++ b/test-data/peak_matrix_as_t.txt	Wed May 30 09:19:03 2018 -0400
@@ -3,7 +3,7 @@
 96.0477230462	5827.43671203	0.0	0.0
 97.0647529114	5479.02718099	0.0	0.0
 97.1011384065	8035.89596354	0.0	0.0
-98.9954998691	0.0	84070.4861979	75661.9152344
+98.99549986905001	0.0	84070.4861979	75661.9152344
 99.0804011767	11309.8386068	0.0	0.0
 101.003118017	22682.028125	0.0	0.0
 101.059284262	7456.7641276	0.0	0.0
@@ -14,7 +14,7 @@
 102.970223555	17487.0717773	0.0	0.0
 103.038951206	0.0	0.0	37153.853125
 103.075318834	5707.61730479	0.0	0.0
-104.106972509	0.0	32634.3841363	29157.5138579
+104.10697250850001	0.0	32634.3841363	29157.5138579
 105.003234195	5455.23701172	0.0	0.0
 105.090964311	5622.83288574	0.0	0.0
 107.070230246	7686.31767578	0.0	0.0
@@ -24,11 +24,11 @@
 109.101137314	36014.0837239	0.0	0.0
 111.08040236	17066.1788086	0.0	0.0
 111.116786045	7945.55084635	0.0	0.0
-112.052301283	0.0	142847.610156	69397.7929688
+112.05230128299999	0.0	142847.610156	69397.7929688
 113.059666808	10338.9371908	0.0	0.0
 113.096051485	6042.76516159	0.0	0.0
 114.065677969	8662.26790364	0.0	0.0
-114.066170487	45644.9984375	60988.8873698	47829.8971354
+114.06617048700001	45644.9984375	60988.8873698	47829.8971354
 114.091302909	7528.06638997	0.0	0.0
 115.036557299	0.0	32439.7931785	0.0
 115.075318293	20564.2089193	0.0	0.0
@@ -38,7 +38,7 @@
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 117.054583395	8476.81401367	0.0	0.0
 117.090968646	6084.89666134	0.0	0.0
-118.086253653	0.0	306928.140625	171352.920833
+118.0862536535	0.0	306928.140625	171352.920833
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 120.980267261	10965.2244303	0.0	0.0
 120.980786531	53065.9088542	0.0	0.0
@@ -52,8 +52,8 @@
 126.021940468	0.0	0.0	31275.19734
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-128.994858336	0.0	49864.1898438	47105.5606771
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 129.090974735	20623.5201172	0.0	0.0
 129.127358602	7140.38452962	0.0	0.0
@@ -61,29 +61,29 @@
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-131.009836808	0.0	33371.2676866	32450.8670573
-131.010517825	0.0	128772.124479	101834.059896
-131.018942036	0.0	44018.2648438	45483.2532552
+131.00983680849998	0.0	33371.2676866	32450.8670573
+131.01051782500002	0.0	128772.124479	101834.059896
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 131.106615399	10079.4666992	0.0	0.0
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-132.076671348	0.0	15548107.2333	20506869.8
-132.077202011	0.0	1750115.125	2360257.82083
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 132.077992635	0.0	39382.7370877	51068.0911459
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\ No newline at end of file
diff -r 62bcdba9ddcc -r 79fdd9fc8eba test-data/peak_matrix_hdf5_to_txt_comprehensive_snr.txt
--- a/test-data/peak_matrix_hdf5_to_txt_comprehensive_snr.txt	Tue Feb 27 14:03:10 2018 -0500
+++ b/test-data/peak_matrix_hdf5_to_txt_comprehensive_snr.txt	Wed May 30 09:19:03 2018 -0400
@@ -1,11 +1,11 @@
-mz	missing 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 present				1	1	1	1	2	1	1	1	1	1	1	1	1	1	1	2	1	1	1	1	1	1	1	1	1	2	1	1	1	3	1	1	1	1	1	1	1	1	1	2	1	1	1	1	1	2	1	1	1	1	1	1	1	2	2	1	1	1	1	3	1	1	2	2	2	1	1	1	2	2	2	2	2	2	2	1	2	3	3	2	2	2	2	2	2	1	1	1	1	1	2	1	2	2	1	1	1	1	1	1	1	1	1	1	1	2	3	2	2	1	1	1	2	2	1	3	1	1	1	1	1	1	1	1	1	1	1	2	1	1	1	1	1	1	2	2	2	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	2	1	1	1	1	2	2	2	1	2	2	2	1	1	2	1	2	2	2	2	1	2	2	2	2	1	1	1	1	1	1	1	1	1	1	2	2	1	1	2	2	2	1	1	1	1	1	1	1	2	2	2	1	3	2	2	2	2	1	1	2	2	1	2	2	2	2	1	2	2	1	2	2	1	1	1	2	1	1	1	2	2	1	1	1	2	2	2	1	2	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	2	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	1	2	2	1	1	1	1	1	1	1	1	1	1	1	2	2	1	2	2	2	2	3	2	1	2	1	2	3	2	2	1	1	1	2	2	1	1	1	2	2	2	2	1	1	1	1	2	1	1	1	1	1	1	1	1	1	2	2	1	1	1	1	1	1	1	2	1	1	1	1	1	1	1	1	1	1	2	1	1	1	1	1	1	1	1	1	1	1	1	2	2	2	1	2	2	1	1	2	1	1	1	2	1	1	1	1	2	1	1	2	2	1	2	1	2	2	2	1	2	2	1	1	2	1	1	2	1	2	2	1	1	1	1	1	2	2	2	2	1	1	2	2	1	1	1	3	2	2	3	2	2	2	1	2	3	1	1	1	1	1	3	1	1	1	1	3	2	1	1	2	1	2	2	1	1	2	2	1	2	1	3	1	1	1	1	2	3	1	2	3	1	1	2	2	2	1	3	1	1	1	1	1	2	3	1	3	1	1	1	1	1	2	2	3	2	2	1	1	1	1	2	2	1	1	2	1	1	1	1	2	1	1	1	3	1	2	3	1	2	3	2	1	2	1	1	1	2	1	2	2	1	1	2	2	1	1	1	1	1	1	1	2	1	3	2	1	2	2	1	3	2	1	1	2	1	1	1	1	2	1	1	3	2	1	1	2	2	1	1	1	2	2	2	1	2	1	1	1	2	1	1	1	1	1	1	1	2	1	1	1	2	1	1	1	1	1	2	2	2	1	1	3	1	1	1	1	2	2	1	1	1	1	1	1	1	1	1	1	1	2	1	2	1	1	1	1	3	1	2	1	1	2	1	1	1	2	1	1	1	1	1	1	1	2	2	1	1	1	1	1	1	1	1	1	1	1	1	1	1	2	2	2	1	2	1	1	1	1	1	1	1	1	1	1	2	1	2	1	1	1	1	1	1	1	1	1	1	2	2	1	1	2	1	3	1	1	1	3	1	2	2	1	1	2	1	1	1	2	2	1	2	1	3	2	2	1	2	2	1	1	1	1	1	1	1	1	1	2	2	2	1	1	1	1	2	1	1	2	1	2	2	1	2	1	1	1	1	1	1	1	2	2	1	1	3	1	1	1	1	1	1	2	1	1	1	1	1	1	2	1	2	1	2	1	1	1	1	1	1	1	1	1	1	1	1	1	1	3	1	1	3	1	2	1	1	2	1	2	1	1	1	1	1	1	1	1	1	2	2	1	1	1	1	3	2	1	1	2	3	3	2	1	3	1	1	1	3	3	1	1	1	1	2	2	1	1	1	2	2	1	1	2	2	1	2	1	1	2	1	2	2	1	2	1	2	2	1	2	1	1	2	1	1	2	1	1	3	2	1	2	2	1
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-rsd_all				nan	nan	nan	nan	7.44464804268	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	7.95741393603	nan	nan	nan	nan	nan	nan	nan	nan	nan	48.9403897991	nan	nan	nan	16.1208244867	nan	nan	nan	nan	nan	nan	nan	nan	nan	40.0877914687	nan	nan	nan	nan	nan	7.42140723217	nan	nan	nan	nan	nan	nan	nan	19.0959428766	4.02320389621	nan	nan	nan	nan	69.0168382411	nan	nan	1.97751570629	16.520015012	2.31482831144	nan	nan	nan	21.6810898698	23.7716957344	22.6647952447	19.8082794922	19.450155988	20.9925495033	18.2702430845	nan	2.72928869643	83.8750434369	66.1115208021	15.9195461534	12.327067359	11.4879595591	16.6762667568	18.4675195476	24.2091693345	nan	nan	nan	nan	nan	17.7344591835	nan	67.2951594484	45.3693275302	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	18.0569928283	82.5359655168	13.7094342665	35.8845387519	nan	nan	nan	21.1375759205	8.22595249942	nan	118.829668852	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	11.3908653579	nan	nan	nan	nan	nan	nan	52.4546850431	64.6542320665	69.9637172766	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	4.27104151826	nan	nan	nan	nan	49.5160244993	48.798238213	14.6928677287	nan	3.01771169782	9.33270805809	9.67943434102	nan	nan	27.889163615	nan	16.926186088	18.843138211	17.9017894518	27.7786791924	nan	42.6188268794	47.9240327229	36.9848597427	6.03303380421	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	19.5297182399	7.5508492559	nan	nan	49.3222230024	54.0012447889	10.9290373533	nan	nan	nan	nan	nan	nan	nan	7.94927146684	14.8083403753	7.41875749154	nan	86.9301483343	10.8504009126	1.17351314152	3.16244801967	9.77354954635	nan	nan	43.0305641304	40.1236754058	nan	39.159997627	16.3979609129	1.77064748731	11.1158945725	nan	7.39240487285	3.93034038849	nan	22.6597583435	21.5085986808	nan	nan	nan	18.161770321	nan	nan	nan	37.3564208113	24.1904833516	nan	nan	nan	6.71427704204	95.4171906069	37.5732833962	nan	44.1753057556	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	1.19876978223	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	8.62218653668	9.52199838886	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	35.196717856	2.49191808531	nan	43.5910973504	1.49680585581	33.6735275234	36.3373577359	71.2213184954	30.3374016279	nan	30.4161520291	nan	3.55948067768	86.7040015113	7.67836657254	11.4781069696	nan	nan	nan	10.1404422858	5.25786822748	nan	nan	nan	45.9762459881	3.47779562592	17.9114968869	5.20570813961	nan	nan	nan	nan	1.40825215985	nan	nan	nan	nan	nan	nan	nan	nan	nan	7.89025710196	9.38847819881	nan	nan	nan	nan	nan	nan	nan	13.7537832697	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	45.991001402	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	5.91561167972	5.10573020313	20.7985986734	nan	21.1895774576	6.41298058833	nan	nan	34.6125608543	nan	nan	nan	1.88755999532	nan	nan	nan	nan	10.0478088132	nan	nan	24.7767044371	21.5029597711	nan	22.6364577418	nan	15.0691847886	18.4738253146	18.7744292593	nan	19.519680163	0.0529467383653	nan	nan	41.369834317	nan	nan	54.9747719465	nan	2.28569684908	8.46483030761	nan	nan	nan	nan	nan	115.888168985	3.45318353419	7.45327646678	9.06933731611	nan	nan	9.1063160092	4.56049895046	nan	nan	nan	53.880798905	13.3462599911	16.5935876239	56.64910323	10.377933875	28.8397338485	34.1141105497	nan	32.8626593953	26.8604356663	nan	nan	nan	nan	nan	51.5107717106	nan	nan	nan	nan	122.607168582	1.18309610182	nan	nan	22.0669957474	nan	37.0131107607	6.52261345997	nan	nan	2.50421912039	15.0290170282	nan	35.6193769015	nan	102.656631033	nan	nan	nan	nan	44.0856775386	70.2988569333	nan	16.5244495002	73.102223466	nan	nan	54.5733575443	53.5718778215	21.3569539301	nan	88.2091697639	nan	nan	nan	nan	nan	30.0717731103	57.8693574695	nan	69.4449658637	nan	nan	nan	nan	nan	55.0090249866	19.6571810851	83.3477196321	2.32332218064	97.1747763022	nan	nan	nan	nan	54.5667925427	5.67394894547	nan	nan	56.1699693307	nan	nan	nan	nan	10.1371171286	nan	nan	nan	78.6158089633	nan	10.7546314804	44.1563693073	nan	39.1769743465	42.247377757	52.5048895826	nan	19.7726572521	nan	nan	nan	11.4890418659	nan	11.0697864218	14.172729267	nan	nan	7.99444667464	34.1843657825	nan	nan	nan	nan	nan	nan	nan	74.5207719802	nan	47.4248894436	15.3776766182	nan	102.101698289	75.1583003629	nan	135.476827106	75.1378659304	nan	nan	80.846707215	nan	nan	nan	nan	76.1102952032	nan	nan	131.485464055	0.336377317388	nan	nan	90.3241326528	71.3271708359	nan	nan	nan	70.7888103378	69.2879762203	60.2771726052	nan	71.2479690375	nan	nan	nan	3.95663144034	nan	nan	nan	nan	nan	nan	nan	19.9313133099	nan	nan	nan	8.07096284963	nan	nan	nan	nan	nan	31.7348579632	128.057505633	19.2756863773	nan	nan	123.569970873	nan	nan	nan	nan	13.0271699446	3.65986616262	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	54.3090001359	nan	27.4263075654	nan	nan	nan	nan	88.457990664	nan	46.5527783151	nan	nan	8.09236827371	nan	nan	nan	72.1146717457	nan	nan	nan	nan	nan	nan	nan	34.187183072	32.5889121734	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	nan	15.9568997856	78.4954922279	10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0	11.3892057341	0.0	0.0	0.0	0.0	12.9887217159	13.0354007449	0.0	11.7773571589	0.0	19.6742782232	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	13.4972177977	0.0	0.0	0.0	0.0	100.698119929	0.0	21.05986485	0.0	0.0	18.2935739723	0.0	40.4797593424	0.0	89.8372157561	60.6832793851	13.1014292777	19.9075949984	0.0	19.3668540469	0.0	0.0	106.444029387	23.3553817068	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	13.7695115218	0.0	24.9244530154	76.6293564426	200.365390026	0.0	0.0	0.0	52.9216717474	0.0	20.1270624191	0.0	85.3998602803	15.9409008897	0.0	0.0	0.0	25.9297403783	47.7423326559	0.0	66.5581176078	0.0	16.350808615	14.9243630987	0.0	11.0379818935	13.9535034475	0.0	0.0	0.0	16.2595727298	24.915301286	0.0	0.0	12.5326525077	11.3751403225	11.2872931002	26.3705854588	10.9576869704	0.0	0.0	40.9830343898	0.0	0.0	0.0	0.0	28.2544736322	42.5010621501	25.1052193147	19.6539980878	0.0	15.2219615383	13.6225768138	11.7217163155	93.170038069	0.0	649.769086575	18.7622178523	137.910560001	0.0	38.047406797	12.1897174967	0.0	11.0603285371	12.322469694	12.5615045205	12.3539405048	0.0	0.0	16.3746640946	0.0	131.518907352	39.1682927832	26.7456438884	0.0	19.1711462868	16.868819517	12.4625953128	14.9572361498	0.0	0.0	25.9559281077	0.0	19.2532003976	21.1105985765	0.0	54.7118976534	0.0	17.9317375006	0.0	0.0	12.2623651326	0.0	0.0	15.1767110975	16.1073993052	0.0	10.8352452689	10.7661177124	0.0	0.0	14.2560498372	0.0	0.0	0.0	12.9750653887	0.0	0.0	30.1896128959	0.0	0.0	11.0971733546	13.6749271877	0.0	22.4408723712	15.1367547214	24.5162391824	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	12.3408757172	0.0	0.0	0.0	0.0	0.0	29.4632040616	0.0	0.0	11.626899079	0.0	16.3589347091	0.0	0.0	55.7023528125	0.0	16.274560588	11.9807754477	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	12.4047150391	18.1446914846	0.0	0.0	0.0	0.0	16.8362704012	11.2490564201	0.0	0.0	14.9244013618	13.7407674961	361.682872271	12.2988899427	0.0	101.136081712	0.0	0.0	0.0	13.9182316882	14.3702365772	0.0	0.0	0.0	18.6914187767	551.885046616	247.444133255	24.8597828137	31.1068242962	12.5680739256	153.680848731	46.6732912371	0.0	23.632313109	37.7174316228	2496.18228347	0.0	82.0966312828	0.0	85.5565681952	0.0	12.0314192827	17.4906830242	777.190722473	0.0	26.1212965678	0.0	181.653269998	95.7877629621	0.0	46.7377488266	0.0	19.3117540084	14.4233930202	58.4563921888	18.3897852349	11.5941650138	28.952977455	26.8812143075	134.447786612	44.2868070851	12.5994565259	305.739047439	83.6481389716	26.5831810054
\ No newline at end of file
diff -r 62bcdba9ddcc -r 79fdd9fc8eba test-data/peak_matrix_hdf5_to_txt_intensity.txt
--- a/test-data/peak_matrix_hdf5_to_txt_intensity.txt	Tue Feb 27 14:03:10 2018 -0500
+++ b/test-data/peak_matrix_hdf5_to_txt_intensity.txt	Wed May 30 09:19:03 2018 -0400
@@ -6,7 +6,7 @@
 96.0477230462	1	1.0	1.0	nan	0	0	0	5827.43671203	0.0	0.0
 97.0647529114	1	1.0	1.0	nan	0	0	0	5479.02718099	0.0	0.0
 97.1011384065	1	1.0	1.0	nan	0	0	0	8035.89596354	0.0	0.0
-98.9954998691	2	2.0	1.0	7.44464804268	1	1	1	0.0	84070.4861979	75661.9152344
+98.99549986905001	2	2.0	1.0	7.444648042681762	1	1	1	0.0	84070.4861979	75661.9152344
 99.0804011767	1	1.0	1.0	nan	0	0	0	11309.8386068	0.0	0.0
 101.003118017	1	1.0	1.0	nan	0	0	0	22682.028125	0.0	0.0
 101.059284262	1	1.0	1.0	nan	0	0	0	7456.7641276	0.0	0.0
@@ -17,7 +17,7 @@
 102.970223555	1	1.0	1.0	nan	0	0	0	17487.0717773	0.0	0.0
 103.038951206	1	1.0	1.0	nan	1	0	0	0.0	0.0	37153.853125
 103.075318834	1	1.0	1.0	nan	0	0	0	5707.61730479	0.0	0.0
-104.106972509	2	2.0	1.0	7.95741393603	1	1	1	0.0	32634.3841363	29157.5138579
+104.10697250850001	2	2.0	1.0	7.957413936025602	1	1	1	0.0	32634.3841363	29157.5138579
 105.003234195	1	1.0	1.0	nan	0	0	0	5455.23701172	0.0	0.0
 105.090964311	1	1.0	1.0	nan	0	0	0	5622.83288574	0.0	0.0
 107.070230246	1	1.0	1.0	nan	0	0	0	7686.31767578	0.0	0.0
@@ -27,11 +27,11 @@
 109.101137314	1	1.0	1.0	nan	0	0	0	36014.0837239	0.0	0.0
 111.08040236	1	1.0	1.0	nan	0	0	0	17066.1788086	0.0	0.0
 111.116786045	1	1.0	1.0	nan	0	0	0	7945.55084635	0.0	0.0
-112.052301283	2	2.0	1.0	48.9403897991	1	1	1	0.0	142847.610156	69397.7929688
+112.05230128299999	2	2.0	1.0	48.94038979910679	1	1	1	0.0	142847.610156	69397.7929688
 113.059666808	1	1.0	1.0	nan	0	0	0	10338.9371908	0.0	0.0
 113.096051485	1	1.0	1.0	nan	0	0	0	6042.76516159	0.0	0.0
 114.065677969	1	1.0	1.0	nan	0	0	0	8662.26790364	0.0	0.0
-114.066170487	3	3.0	1.0	16.1208244867	0	0	0	45644.9984375	60988.8873698	47829.8971354
+114.06617048700001	3	3.0	1.0	16.120824486690434	0	0	0	45644.9984375	60988.8873698	47829.8971354
 114.091302909	1	1.0	1.0	nan	0	0	0	7528.06638997	0.0	0.0
 115.036557299	1	1.0	1.0	nan	1	0	0	0.0	32439.7931785	0.0
 115.075318293	1	1.0	1.0	nan	0	0	0	20564.2089193	0.0	0.0
@@ -41,13 +41,13 @@
 116.98587154	1	1.0	1.0	nan	0	0	0	45836.8710938	0.0	0.0
 117.054583395	1	1.0	1.0	nan	0	0	0	8476.81401367	0.0	0.0
 117.090968646	1	1.0	1.0	nan	0	0	0	6084.89666134	0.0	0.0
-118.086253653	2	2.0	1.0	40.0877914687	1	1	1	0.0	306928.140625	171352.920833
+118.0862536535	2	2.0	1.0	40.08779146869827	1	1	1	0.0	306928.140625	171352.920833
 119.085485311	1	1.0	1.0	nan	0	0	0	11283.0052083	0.0	0.0
 120.980267261	1	1.0	1.0	nan	0	0	0	10965.2244303	0.0	0.0
 120.980786531	1	1.0	1.0	nan	0	0	0	53065.9088542	0.0	0.0
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@@ -129,16 +129,16 @@
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\ No newline at end of file
diff -r 62bcdba9ddcc -r 79fdd9fc8eba test-data/peak_matrix_hdf5_to_txt_mz.txt
--- a/test-data/peak_matrix_hdf5_to_txt_mz.txt	Tue Feb 27 14:03:10 2018 -0500
+++ b/test-data/peak_matrix_hdf5_to_txt_mz.txt	Wed May 30 09:19:03 2018 -0400
@@ -1,4 +1,4 @@
-mz	98.9954998691	104.106972509	112.052301283	118.086253653	123.013845316	128.010843476	128.994858336	131.009836808	131.010517825	131.018942036	132.074583988	132.075008963	132.075567318	132.076101717	132.076671348	132.077202011	132.077992635	132.10124611	132.101899697	133.073124466	133.073801709	133.078935658	133.079460494	133.080118687	133.080632528	134.080996946	135.002862414	136.047429382	136.048119883	136.048697166	136.061765976	136.940051855	137.029491761	137.045773739	139.015603989	140.066921905	140.067478979	140.06819156	144.101942195	146.116764318	146.117593543	146.165212548	147.075026099	147.07563403	147.076381496	147.112840746	148.002470297	148.003082516	148.003895413	148.004529246	148.059628878	148.060463029	148.061104039	148.079812778	150.976840465	152.022107353	156.041293988	156.04209741	156.076741027	160.133198751	161.128432541	162.110690219	162.112377858	162.113089295	163.045136563	163.114854206	163.115822095	163.976865689	163.977780102	165.975937112	166.086251818	166.950728597	167.021727034	168.00575923	169.058369029	170.031627109	170.032608751	172.03075001	172.984687975	173.080840757	174.89594473	175.001680018	175.118963541	176.102979229	191.040098978	200.067015416	200.068336832	201.933718688	202.066511789	202.180178742	203.040079527	203.051224356	203.052583123	203.931844481	204.056007584	204.121476777	204.122881675	204.123967408	205.055741463	205.124995123	205.126369088	206.05531063	206.1273128	207.014274578	207.078225213	207.988550264	210.087340882	210.089121447	210.985281317	214.058850666	218.137147136	218.138617868	218.18633146	219.026587805	219.142081286	222.029254451	222.988227171	227.113639423	229.152780695	229.154420238	230.157792453	232.151182802	232.152363977	232.154032856	233.157441453	235.066006489	238.022752298	241.129235983	242.078631865	242.115014467	245.13541974	245.147333125	245.149278063	246.152668181	246.169719791	248.146977998	248.148957043	249.045257364	249.153279612	249.155411959	250.158796263	257.041913238	258.109821983	260.185330942	260.196578012	262.128218019	262.164606458	263.145935141	266.187766715	269.087730151	270.109886656	276.180208183	293.071380726	296.06590552	298.992809793	306.21928064	307.043708382	308.047169681	308.090980265	309.041951809	310.046940741	316.203654392	317.114880954	318.215940621	318.219163989	319.222645274	320.217490758	320.234511416	320.974705507	321.234813105	321.238113065	322.23301528	322.241621481	322.250574378	323.236408988	328.067170959	332.028813361	334.214166454	336.229835303	336.948656669	346.046894367	348.070300004	366.203861182	369.222872079	370.052089279	371.326530086	376.29721222	377.300668857	386.025883713	386.221824198	394.27986697	395.33770243	400.157233205	408.007909317	413.348315017	415.156897262	416.084309262	424.281826443	425.135463252	425.28532915	426.138910614	427.133904681	427.142968192	445.249096557	445.988977013	453.112608304	454.040051872	457.043005407	461.332821274	461.962854671	469.410689679	470.013893312	476.227406838	483.075340494	483.944790467	484.323934317	517.396406557	518.25000135	519.253359366	527.183398853	533.249780822	545.423300216	546.426817562	548.28553146	549.289149666	553.348831297	553.367591025	553.376240677	554.355151822	554.371473263	555.366527064	555.37434307	556.370112699	557.095013624	559.151213812	569.363651248	570.367404206
+mz	98.99549986905001	104.10697250850001	112.05230128299999	118.0862536535	123.013845316	128.01084347649999	128.9948583365	131.00983680849998	131.01051782500002	131.0189420355	132.0745839875	132.07500896250002	132.0755673175	132.076101717	132.07667134849999	132.0772020105	132.077992635	132.1012461105	132.10189969733332	133.0731244665	133.0738017085	133.07893565799998	133.07946049449998	133.08011868699998	133.0806325275	134.080996946	135.002862414	136.04742938200002	136.04811988266667	136.04869716550002	136.0617659765	136.940051855	137.02949176099997	137.045773739	139.0156039895	140.06692190500002	140.067478979	140.06819156	144.1019421955	146.116764318	146.117593543	146.1652125485	147.07502609850002	147.0756340295	147.07638149550002	147.11284074600002	148.0024702965	148.003082516	148.00389541250001	148.0045292465	148.059628878	148.0604630295	148.06110403949998	148.07981277800002	150.97684046450001	152.02210735300002	156.041293988	156.0420974105	156.0767410265	160.13319875050001	161.1284325415	162.1106902195	162.11237785766667	162.1130892945	163.045136563	163.11485420600002	163.1158220945	163.976865689	163.9777801015	165.975937112	166.086251818	166.950728597	167.02172703399998	168.00575923000002	169.058369029	170.031627109	170.0326087505	172.03075001	172.98468797549998	173.0808407575	174.8959447305	175.0016800175	175.118963541	176.102979229	191.0400989775	200.067015416	200.0683368315	201.9337186885	202.0665117885	202.180178742	203.040079527	203.0512243555	203.0525831235	203.93184448099998	204.05600758449998	204.1214767765	204.12288167466667	204.1239674085	205.055741463	205.124995123	205.12636908849998	206.05531063	206.1273128	207.0142745775	207.078225213	207.9885502645	210.087340882	210.0891214465	210.985281317	214.05885066550002	218.13714713550002	218.13861786799998	218.18633146000002	219.02658780500002	219.142081286	222.02925445099999	222.988227171	227.1136394225	229.152780695	229.1544202385	230.15779245250002	232.151182802	232.152363977	232.15403285600001	233.15744145349998	235.06600648850002	238.0227522975	241.129235983	242.078631865	242.11501446749998	245.13541974	245.14733312549998	245.149278063	246.152668181	246.169719791	248.14697799750002	248.1489570435	249.0452573635	249.1532796115	249.1554119595	250.1587962625	257.0419132375	258.10982198299996	260.185330942	260.19657801150004	262.128218019	262.1646064585	263.1459351415	266.1877667145	269.0877301505	270.10988665649995	276.180208183	293.07138072600003	296.0659055195	298.992809793	306.21928063999997	307.043708382	308.047169681	308.0909802655	309.041951809	310.04694074149995	316.20365439249997	317.1148809545	318.215940621	318.219163989	319.2226452745	320.217490758	320.23451141550004	320.97470550699995	321.2348131055	321.2381130655	322.2330152795	322.24162148100004	322.250574378	323.236408988	328.067170959	332.0288133615	334.214166454	336.22983530299996	336.948656669	346.04689436700005	348.07030000350005	366.20386118199997	369.2228720785	370.05208927850003	371.3265300865	376.29721222	377.3006688575	386.025883713	386.22182419800004	394.2798669695	395.33770243000004	400.157233205	408.0079093175	413.3483150175	415.15689726200003	416.08430926200003	424.2818264425	425.1354632523333	425.2853291495	426.1389106135	427.133904681	427.142968192	445.24909655650004	445.988977013	453.112608304	454.0400518725	457.043005407	461.33282127350003	461.962854671	469.41068967850003	470.0138933125	476.227406838	483.075340494	483.94479046699996	484.32393431749995	517.3964065565001	518.2500013495	519.2533593655	527.1833988535	533.249780822	545.4233002164999	546.4268175625	548.28553146	549.289149666	553.3488312970001	553.367591025	553.3762406774999	554.3551518219999	554.3714732635	555.3665270644999	555.3743430695	556.3701126994999	557.095013624	559.1512138115	569.3636512475	570.367404206
 batch04_B02_rep01_301_2_302_3_303	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	132.101865173	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	136.048097088	0.0	0.0	0.0	0.0	137.045758008	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	162.112441177	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	204.123030689	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	425.135750384	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0	0.0
 batch04_QC17_rep01_262_2_263_3_264	98.9955011572	104.106975455	112.052301296	118.086252982	123.013844104	128.010844488	128.994863945	131.009832759	131.010516364	131.018942282	132.074579642	132.075002532	132.075557576	132.076094335	132.076676827	132.077211554	132.078018439	132.101242393	132.101924406	133.073117049	133.073804591	133.078935168	133.079451196	133.080125021	133.080636658	134.081009691	135.002874823	136.047435694	136.048141627	136.048698803	136.061774451	136.940056932	137.029493493	137.045788473	139.015604335	140.066931939	140.067487509	140.068178564	144.101934972	146.116774273	146.117588213	146.165208908	147.075041061	147.075640974	147.076393273	147.11284157	148.002474814	148.003081907	148.003901655	148.004525817	148.059637644	148.060456122	148.061101311	148.079810724	150.976839488	152.022106709	156.041288332	156.042085861	156.076742825	160.133196834	161.128430024	162.110681697	162.112347928	162.113085678	163.045129879	163.114865478	163.115816669	163.976870744	163.977788022	165.975937136	166.086253509	166.950727266	167.021724923	168.00575294	169.058366731	170.031626739	170.032610447	172.030747707	172.984683666	173.080839357	174.89594249	175.001678498	175.118960757	176.10297907	191.04010577	200.067022569	200.068325058	201.933720595	202.066509548	202.180177344	203.040075181	203.051230115	203.05256408	203.931842214	204.055997546	204.121465656	204.122806573	204.123965404	205.055738058	205.124992282	205.126367448	206.05529932	206.127308609	207.014269163	207.078224604	207.988550063	210.087334204	210.089117263	210.985279465	214.058852301	218.137158594	218.138610019	218.186322657	219.026580461	219.142076029	222.029246958	222.988223501	227.113641599	229.152780792	229.154417718	230.15779658	232.151189046	232.152366561	232.154039686	233.157443863	235.066015058	238.022759915	241.129240089	242.078635329	242.115015579	245.135422892	245.14733173	245.149282924	246.152673679	246.169724527	248.146988681	248.148961248	249.045267342	249.153303635	249.155403213	250.158803208	257.041912543	258.109820009	260.185337397	260.196582152	262.128219421	262.164610947	263.14594383	266.187774857	269.087739971	270.109898425	276.180211166	293.071390931	296.065816031	298.992721127	306.219167744	307.043568114	308.047061333	308.090866217	309.041842287	310.046855737	316.203560629	317.114774106	318.215985884	318.21910788	319.222537577	320.217427172	320.234503635	320.974599782	321.234839358	321.238049184	322.232910918	322.241505086	322.250460778	323.236312512	328.067091786	332.028713224	334.214059366	336.229741338	336.948548714	346.046755156	348.070172644	366.203886148	369.222898747	370.052127903	371.326607508	376.297191618	377.300680177	386.025893301	386.22187943	394.279916438	395.337771197	400.157262913	408.007921393	413.348355838	415.156926201	416.08433779	424.281786779	425.135340955	425.285365732	426.138939429	427.133948292	427.143034741	445.249207301	445.988997896	453.112614632	454.040050535	457.043013865	461.332846603	461.962899511	469.410709106	470.013901602	476.22739994	483.075377967	483.944820232	484.323957616	517.396377182	518.249998335	519.253329745	527.18338979	533.249820407	545.423465988	546.426988465	548.285586551	549.289206956	553.348767641	553.367534761	553.376197241	554.355075264	554.371468071	555.366520835	555.374314453	556.370118653	557.094969128	559.151178004	569.363794088	570.367451
-batch04_S01_rep01_247_2_248_3_249	98.9954985809	104.106969562	112.05230127	118.086254325	123.013846528	128.010842465	128.994852728	131.009840858	131.010519286	131.018941789	132.074588333	132.075015393	132.075577059	132.076109099	132.07666587	132.077192467	132.077966831	132.101249828	132.101909513	133.073131884	133.073798826	133.078936148	133.079469793	133.080112353	133.080628397	134.080984201	135.002850005	136.04742307	136.048120933	136.048695528	136.061757502	136.940046778	137.029490029	137.045774736	139.015603644	140.066911871	140.067470449	140.068204556	144.101949419	146.116754363	146.117598873	146.165216189	147.075011136	147.075627085	147.076369718	147.112839922	148.002465779	148.003083125	148.00388917	148.004532676	148.059620112	148.060469937	148.061106768	148.079814832	150.976841441	152.022107997	156.041299644	156.04210896	156.076739228	160.133200667	161.128435059	162.110698742	162.112344468	162.113092911	163.045143247	163.114842934	163.11582752	163.976860634	163.977772181	165.975937088	166.086250127	166.950729928	167.021729145	168.00576552	169.058371327	170.031627479	170.032607054	172.030752313	172.984692285	173.080842158	174.895946971	175.001681537	175.118966325	176.102979388	191.040092185	200.067008263	200.068348605	201.933716782	202.066514029	202.18018014	203.040083873	203.051218596	203.052602167	203.931846748	204.056017623	204.121487897	204.122807762	204.123969413	205.055744868	205.124997964	205.126370729	206.05532194	206.127316991	207.014279992	207.078225822	207.988550466	210.08734756	210.08912563	210.985283169	214.05884903	218.137135677	218.138625717	218.186340263	219.026595149	219.142086543	222.029261944	222.988230841	227.113637246	229.152780598	229.154422759	230.157788325	232.151176558	232.152361393	232.154026026	233.157439044	235.065997919	238.02274468	241.129231877	242.078628401	242.115013356	245.135416588	245.147334521	245.149273202	246.152662683	246.169715055	248.146967314	248.148952839	249.045247385	249.153255588	249.155420706	250.158789317	257.041913932	258.109823957	260.185324487	260.196573871	262.128216617	262.16460197	263.145926453	266.187758572	269.08772033	270.109874888	276.1802052	293.071370521	296.065995008	298.992898459	306.219393536	307.04384865	308.047278029	308.091094314	309.042061331	310.047025746	316.203748156	317.114987803	318.215895358	318.219220098	319.222752972	320.217554344	320.234519196	320.974811232	321.234786853	321.238176947	322.233119641	322.241737876	322.250687978	323.236505464	328.067250132	332.028913499	334.214273542	336.229929268	336.948764624	346.047033578	348.070427363	366.203836216	369.22284541	370.052050654	371.326452665	376.297232822	377.300657538	386.025874125	386.221768966	394.279817501	395.337633663	400.157203497	408.007897242	413.348274197	415.156868323	416.084280734	424.281866106	425.135298418	425.285292567	426.138881798	427.13386107	427.142901643	445.248985812	445.98895613	453.112601976	454.04005321	457.042996949	461.332795944	461.962809831	469.410670251	470.013885023	476.227413736	483.075303021	483.944760702	484.323911019	517.396435931	518.250004364	519.253388986	527.183407917	533.249741237	545.423134445	546.42664666	548.285476369	549.289092376	553.348894953	553.367647289	553.376284114	554.35522838	554.371478456	555.366533294	555.374371686	556.370106746	557.09505812	559.151249619	569.363508407	570.367357412
+batch04_S01_rep01_247_2_248_3_249	98.9954985809	104.106969562	112.05230127	118.086254325	123.013846528	128.010842465	128.994852728	131.009840858	131.010519286	131.018941789	132.074588333	132.075015393	132.075577059	132.076109099	132.07666587	132.077192467	132.077966831	132.101249828	132.101909513	133.073131884	133.073798826	133.078936148	133.079469793	133.080112353	133.080628397	134.080984201	135.002850005	136.04742307	136.048120933	136.048695528	136.061757502	136.940046778	137.029490029	137.045774736	139.015603644	140.066911871	140.067470449	140.068204556	144.101949419	146.116754363	146.117598873	146.165216189	147.075011136	147.075627085	147.076369718	147.112839922	148.002465779	148.003083125	148.00388917	148.004532676	148.059620112	148.060469937	148.061106768	148.079814832	150.976841441	152.022107997	156.041299644	156.04210896	156.076739228	160.133200667	161.128435059	162.110698742	162.112344468	162.113092911	163.045143247	163.114842934	163.11582752	163.976860634	163.977772181	165.975937088	166.086250127	166.950729928	167.021729145	168.00576552	169.058371327	170.031627479	170.032607054	172.030752313	172.984692285	173.080842158	174.895946971	175.001681537	175.118966325	176.102979388	191.040092185	200.067008263	200.068348605	201.933716782	202.066514029	202.18018014	203.040083873	203.051218596	203.052602167	203.931846748	204.056017623	204.121487897	204.122807762	204.123969413	205.055744868	205.124997964	205.126370729	206.05532194	206.127316991	207.014279992	207.078225822	207.988550466	210.08734756	210.08912563	210.985283169	214.05884903	218.137135677	218.138625717	218.186340263	219.026595149	219.142086543	222.029261944	222.988230841	227.113637246	229.152780598	229.154422759	230.157788325	232.151176558	232.152361393	232.154026026	233.157439044	235.065997919	238.02274468	241.129231877	242.078628401	242.115013356	245.135416588	245.147334521	245.149273202	246.152662683	246.169715055	248.146967314	248.148952839	249.045247385	249.153255588	249.155420706	250.158789317	257.041913932	258.109823957	260.185324487	260.196573871	262.128216617	262.16460197	263.145926453	266.187758572	269.08772033	270.109874888	276.1802052	293.071370521	296.065995008	298.992898459	306.219393536	307.04384865	308.047278029	308.091094314	309.042061331	310.047025746	316.203748156	317.114987803	318.215895358	318.219220098	319.222752972	320.217554344	320.234519196	320.974811232	321.234786853	321.238176947	322.233119641	322.241737876	322.250687978	323.236505464	328.067250132	332.028913499	334.214273542	336.229929268	336.948764624	346.047033578	348.070427363	366.203836216	369.22284541	370.052050654	371.326452665	376.297232822	377.300657538	386.025874125	386.221768966	394.279817501	395.337633663	400.157203497	408.007897242	413.348274197	415.156868323	416.084280734	424.281866106	425.135298418	425.285292567	426.138881798	427.13386107	427.142901643	445.248985812	445.98895613	453.112601976	454.04005321	457.042996949	461.332795944	461.962809831	469.410670251	470.013885023	476.227413736	483.075303021	483.944760702	484.323911019	517.396435931	518.250004364	519.253388986	527.183407917	533.249741237	545.423134445	546.42664666	548.285476369	549.289092376	553.348894953	553.367647289	553.376284114	554.35522838	554.371478456	555.366533294	555.374371686	556.370106746	557.09505812	559.151249619	569.363508407	570.367357412
\ No newline at end of file
diff -r 62bcdba9ddcc -r 79fdd9fc8eba test-data/peak_matrix_hdf5_to_txt_snr.txt
--- a/test-data/peak_matrix_hdf5_to_txt_snr.txt	Tue Feb 27 14:03:10 2018 -0500
+++ b/test-data/peak_matrix_hdf5_to_txt_snr.txt	Wed May 30 09:19:03 2018 -0400
@@ -1,4 +1,4 @@
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 batch04_QC17_rep01_262_2_263_3_264	32.5719724663	12.6735172174	55.1549994333	118.259992552	14.3534456993	16.5659710001	19.3910609118	12.9228752459	49.9544844197	17.018537472	10.8787418419	24.1419717358	125.783713476	593.871970439	6010.39372591	676.667227362	15.2668269025	32.5136486883	112.146596205	11.3145139942	40.9071755672	13.2031550682	45.2277673121	170.179025989	14.1855765574	18.5025573736	30.8909201674	29.2288822853	198.16610213	15.9252608268	22.8404921696	47.6717391341	15.9012382379	88.6451797345	34.3442986531	23.3255065625	70.1001135058	481.515262204	21.8807626857	24.4172426399	140.598889068	12.4130278071	34.2847841946	124.289473561	869.122224227	23.0039969509	15.4921685578	42.087089696	258.637927557	18.5926837652	43.1219828844	268.900264667	19.2751855494	31.4107880482	70.1984897635	36.6034840668	34.7406465976	290.040817918	14.8732859394	33.6976320109	16.3690253998	29.4065133599	1431.88890346	124.103236108	11.8557848057	10.7341803635	83.1408823942	24.5574231178	219.200515336	16.2914188264	24.8393676074	46.9805932827	55.7793322532	24.9971874585	36.5229789092	19.0529025363	191.310965875	13.1645999927	14.3226781301	31.9325909958	21.8457173307	62.0737268744	51.1685300827	33.7054423368	27.8972942011	26.8084656975	178.530357592	71.0994885663	13.4187346902	28.0084346086	68.8393664551	43.3049934893	299.822457953	11.6111408758	18.2494269136	212.538273779	3194.34945778	236.698688635	25.9440408367	35.5755417	232.424501909	22.4490233941	17.7496593286	45.8735725404	15.3769344918	11.2946834848	18.7747295574	13.2392438261	17.1837382516	57.9972003973	33.2248561681	386.219087976	55.661316114	59.891104486	33.8909093421	30.0659234819	31.6725799877	12.2108617279	30.763355909	264.166798787	32.376363531	15.9260901646	65.3927654547	594.733980513	65.1674912943	13.971325204	32.6559408164	19.5766533832	53.2726789888	12.1380073091	28.8499918306	29.5990672246	306.397147564	33.4086217343	70.5601000935	11.3677191703	114.746065992	26.752829553	42.2094994385	439.442747435	36.8327722823	15.863419896	20.5750398925	59.3467554387	13.0461068014	29.0760895847	32.2686006934	38.9709928759	30.9702423414	14.6947831254	11.762308005	11.3280376038	25.8622332498	68.2445173598	18.2415661125	11.2311476171	376.309167703	37.5206953056	53.1965227675	26.3357928708	14.1247618719	18.9859562978	24.3758794894	12.0442116872	175.646338272	30.5748388038	11.4379934706	1582.78733006	46.695148752	17.671470985	261.271100085	88.0412646308	20.6899998473	18.6091410812	15.4198176312	15.758689671	12.4337242067	58.6205708532	53.8245168181	36.963925221	22.646691024	17.7707397017	23.7712708486	49.6964680231	24.4130925933	34.7134995687	210.009255088	44.9502918068	73.1498540546	70.0984494163	14.8018184138	15.8915179116	16.6235699115	12.5259725058	13.0132034445	13.965460015	11.5704977174	220.043221181	659.300284875	42.7227181838	140.707214302	38.7950332252	12.7874836523	25.0623082078	22.388263349	14.9038610086	20.6604820122	11.0263311771	41.2595141661	24.1004117074	19.1870969856	13.0118151987	17.8110101334	16.7136157656	14.2261752696	16.3932057203	32.4563109428	67.7249862558	18.8187124753	18.2962474876	14.4689798908	329.679068158	99.8957760263	121.352079276	38.009714774	41.7780198121	2823.83227642	85.1605921543	19.4339962698	884.458777661	207.675374763	108.969986691	53.2340901707	19.0299005103	14.8620174687	154.679537445	42.921133024
-batch04_S01_rep01_247_2_248_3_249	29.1450101692	11.4029541309	26.6706097673	65.9129785479	12.8361207096	12.5887141682	18.1738870974	12.5029416526	39.2420940643	17.5236947432	14.5521229306	33.7015165238	172.921630576	783.074503416	7890.53014739	908.060331335	19.7999598644	31.0065089557	106.320383274	14.1627966488	48.5067629241	15.4655233304	57.0005637827	220.002640213	20.2645705597	23.6425345661	15.7389691415	22.4742009609	153.800490893	12.9021969764	13.5289343462	35.1791189379	17.8027145046	22.9101033887	29.0717840023	10.4351781971	26.0012626069	162.171595168	20.5234147547	11.7347068919	68.0448555761	15.209643774	35.7072823486	141.614224422	995.488692629	15.3596100852	19.626216186	54.8042362232	332.410853955	27.5707172754	23.0818703511	132.401997754	11.352292313	34.1915179905	52.7082207875	32.6922781816	16.7298237531	129.373547053	12.7332443974	37.6588394362	20.1752219396	32.6255898833	1649.89025387	144.575605326	11.8182139938	11.4577517246	95.4530369747	45.9819102429	392.376498483	28.6812937849	19.6600308029	45.5710384955	65.0245470428	27.6596723274	34.4479945792	26.2370255633	259.109789326	16.9909428614	24.5757517546	45.0510309736	19.7665266095	12.0902301177	29.6325758677	64.4142199996	28.2921152043	23.6056160166	155.109908421	117.512065403	12.7732910828	14.759327	67.4040483492	26.6529754807	176.988021752	17.5671512792	11.8161616815	222.972124841	3525.53976256	263.377489596	22.0258326279	40.9965299845	249.834282356	11.4210228614	18.5953076191	35.3365523063	14.2361444326	11.2876774111	20.9367772161	11.5275722745	14.1466575878	113.357580204	30.4918200742	358.677860537	41.2184943593	44.2327665617	30.9008074552	18.2433951854	32.3166525292	11.7615071479	17.9647800696	161.862502292	19.539131141	16.4229752553	70.8119997843	646.791207011	71.6622317938	11.6676296228	49.6346364686	36.9962397464	42.8220250099	11.5269539356	22.9558739192	27.4410772485	290.575242551	31.6793065631	62.6602968912	11.4656015113	121.121197186	19.1667556434	23.2561335574	223.913527883	19.1146764412	13.0070937558	12.5300643331	84.5048169726	11.9952981643	23.3776659038	21.702191176	54.4286459454	32.5792303817	27.277565931	13.2493745891	14.5218996643	23.3774057332	20.3142241481	14.5305001268	16.8158418665	220.080362075	22.0781658101	30.006752663	16.159203984	15.8490953533	42.2571291115	13.514541111	51.2980983968	395.004885103	68.7928077379	28.6226900936	3628.29618503	31.9664090314	55.4092030284	545.672030518	181.948983687	41.5621679602	31.7855620533	32.1722225497	11.5835913921	11.3845749449	45.2281762965	58.4538694971	33.4367058724	12.9887217159	13.0354007449	13.4972177977	21.05986485	18.2935739723	89.8372157561	106.444029387	23.3553817068	76.6293564426	200.365390026	47.7423326559	66.5581176078	24.915301286	11.3751403225	42.5010621501	15.2219615383	13.6225768138	93.170038069	649.769086575	18.7622178523	137.910560001	38.047406797	12.1897174967	131.518907352	39.1682927832	14.9572361498	25.9559281077	19.2532003976	21.1105985765	54.7118976534	15.1767110975	16.1073993052	12.9750653887	13.6749271877	22.4408723712	24.5162391824	16.3589347091	55.7023528125	16.274560588	12.4047150391	11.2490564201	551.885046616	247.444133255	153.680848731	46.6732912371	37.7174316228	2496.18228347	82.0966312828	17.4906830242	777.190722473	181.653269998	95.7877629621	46.7377488266	14.4233930202	11.5941650138	305.739047439	83.6481389716
+batch04_S01_rep01_247_2_248_3_249	29.1450101692	11.4029541309	26.6706097673	65.9129785479	12.8361207096	12.5887141682	18.1738870974	12.5029416526	39.2420940643	17.5236947432	14.5521229306	33.7015165238	172.921630576	783.074503416	7890.53014739	908.060331335	19.7999598644	31.0065089557	106.320383274	14.1627966488	48.5067629241	15.4655233304	57.0005637827	220.002640213	20.2645705597	23.6425345661	15.7389691415	22.4742009609	153.800490893	12.9021969764	13.5289343462	35.1791189379	17.8027145046	22.9101033887	29.0717840023	10.4351781971	26.0012626069	162.171595168	20.5234147547	11.7347068919	68.0448555761	15.209643774	35.7072823486	141.614224422	995.488692629	15.3596100852	19.626216186	54.8042362232	332.410853955	27.5707172754	23.0818703511	132.401997754	11.352292313	34.1915179905	52.7082207875	32.6922781816	16.7298237531	129.373547053	12.7332443974	37.6588394362	20.1752219396	32.6255898833	1649.89025387	144.575605326	11.8182139938	11.4577517246	95.4530369747	45.9819102429	392.376498483	28.6812937849	19.6600308029	45.5710384955	65.0245470428	27.6596723274	34.4479945792	26.2370255633	259.109789326	16.9909428614	24.5757517546	45.0510309736	19.7665266095	12.0902301177	29.6325758677	64.4142199996	28.2921152043	23.6056160166	155.109908421	117.512065403	12.7732910828	14.759327	67.4040483492	26.6529754807	176.988021752	17.5671512792	11.8161616815	222.972124841	3525.53976256	263.377489596	22.0258326279	40.9965299845	249.834282356	11.4210228614	18.5953076191	35.3365523063	14.2361444326	11.2876774111	20.9367772161	11.5275722745	14.1466575878	113.357580204	30.4918200742	358.677860537	41.2184943593	44.2327665617	30.9008074552	18.2433951854	32.3166525292	11.7615071479	17.9647800696	161.862502292	19.539131141	16.4229752553	70.8119997843	646.791207011	71.6622317938	11.6676296228	49.6346364686	36.9962397464	42.8220250099	11.5269539356	22.9558739192	27.4410772485	290.575242551	31.6793065631	62.6602968912	11.4656015113	121.121197186	19.1667556434	23.2561335574	223.913527883	19.1146764412	13.0070937558	12.5300643331	84.5048169726	11.9952981643	23.3776659038	21.702191176	54.4286459454	32.5792303817	27.277565931	13.2493745891	14.5218996643	23.3774057332	20.3142241481	14.5305001268	16.8158418665	220.080362075	22.0781658101	30.006752663	16.159203984	15.8490953533	42.2571291115	13.514541111	51.2980983968	395.004885103	68.7928077379	28.6226900936	3628.29618503	31.9664090314	55.4092030284	545.672030518	181.948983687	41.5621679602	31.7855620533	32.1722225497	11.5835913921	11.3845749449	45.2281762965	58.4538694971	33.4367058724	12.9887217159	13.0354007449	13.4972177977	21.05986485	18.2935739723	89.8372157561	106.444029387	23.3553817068	76.6293564426	200.365390026	47.7423326559	66.5581176078	24.915301286	11.3751403225	42.5010621501	15.2219615383	13.6225768138	93.170038069	649.769086575	18.7622178523	137.910560001	38.047406797	12.1897174967	131.518907352	39.1682927832	14.9572361498	25.9559281077	19.2532003976	21.1105985765	54.7118976534	15.1767110975	16.1073993052	12.9750653887	13.6749271877	22.4408723712	24.5162391824	16.3589347091	55.7023528125	16.274560588	12.4047150391	11.2490564201	551.885046616	247.444133255	153.680848731	46.6732912371	37.7174316228	2496.18228347	82.0966312828	17.4906830242	777.190722473	181.653269998	95.7877629621	46.7377488266	14.4233930202	11.5941650138	305.739047439	83.6481389716
\ No newline at end of file
diff -r 62bcdba9ddcc -r 79fdd9fc8eba test-data/pls.h5
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diff -r 62bcdba9ddcc -r 79fdd9fc8eba test-data/pls_QC18.h5
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diff -r 62bcdba9ddcc -r 79fdd9fc8eba test-data/pls_rf.h5
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diff -r 62bcdba9ddcc -r 79fdd9fc8eba test-data/pm_as.h5
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diff -r 62bcdba9ddcc -r 79fdd9fc8eba test-data/pm_as_bf.h5
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diff -r 62bcdba9ddcc -r 79fdd9fc8eba test-data/pm_as_bf_rmbs.h5
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diff -r 62bcdba9ddcc -r 79fdd9fc8eba test-data/pm_as_bf_sf.h5
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diff -r 62bcdba9ddcc -r 79fdd9fc8eba test-data/pm_as_bf_sf_mv.h5
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diff -r 62bcdba9ddcc -r 79fdd9fc8eba test-data/pm_as_bf_sf_within.h5
Binary file test-data/pm_as_bf_sf_within.h5 has changed
diff -r 62bcdba9ddcc -r 79fdd9fc8eba test-data/sample_list_after_mv_filter.txt
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/sample_list_after_mv_filter.txt	Wed May 30 09:19:03 2018 -0400
@@ -0,0 +1,3 @@
+filename	classLabel
+batch04_QC17_rep01_262_2_263_3_264	QC
+batch04_S01_rep01_247_2_248_3_249	sample
diff -r 62bcdba9ddcc -r 79fdd9fc8eba test-data/samplelist_2.txt
--- a/test-data/samplelist_2.txt	Tue Feb 27 14:03:10 2018 -0500
+++ b/test-data/samplelist_2.txt	Wed May 30 09:19:03 2018 -0400
@@ -1,4 +1,4 @@
-filename	injectionOrder	replicates	replicate	classLabel
-batch04_B02_rep01_301_2_302_3_303	1	1_2_3	1	blank
-batch04_QC17_rep01_262_2_263_3_264	4	1_2_3	1	QC
-batch04_S01_rep01_247_2_248_3_249	7	1_2_3	1	sample
+filename	injectionOrder	replicates	classLabel
+batch04_B02_rep01_301_2_302_3_303	1	1_2_3	blank
+batch04_QC17_rep01_262_2_263_3_264	4	1_2_3	QC
+batch04_S01_rep01_247_2_248_3_249	7	1_2_3	sample