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1 <tool id="snpsplit" name="SNP splitter">
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2 <description>splits multicharacter entries into separate lines</description>
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3 <command interpreter="python">snpsplit.py $input $output</command>
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4 <inputs>
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5 <param name="input" type="data" format="tabular" label="SNP table" />
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6 </inputs>
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7 <outputs>
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8 <data name="output" format="tabular" label="${tool.name} on ${on_string}" />
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9 </outputs>
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10 <help>
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11
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12 Input: tab delimited, format Position Ref Mut
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13 Position is 1-based genomic coordinate
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14 Ref is the reference sequence
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15 Mut is the mutant sequence
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16
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17 Ref en Mut sequences consisting of more than one character will be split up into separate lines. Example:
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18 Input:
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19 123 CGT ATG
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20 Output:
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21 123 C A
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22 124 G T
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23 125 T G
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24
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25 Bases that are the same in both columns, will be skipped. Example:
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26 Input:
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27 123 CGT AGG
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28 Output:
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29 123 C A
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30 125 T G
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31
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32 </help>
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33 </tool>
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