Mercurial > repos > rico > test_single_file
changeset 29:58a735eab9a9 default tip
Uploaded
| author | rico |
|---|---|
| date | Thu, 05 Apr 2012 15:24:16 -0400 |
| parents | 700472442995 |
| children | |
| files | bigwig_pos.xml |
| diffstat | 1 files changed, 16 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/bigwig_pos.xml Thu Apr 05 15:24:16 2012 -0400 @@ -0,0 +1,16 @@ +<display id="ucsc_bigwig_pos" version="1.0.0" name="display at UCSC"> + <!-- Load links from file: one line to one link --> + <dynamic_links from_file="tool-data/shared/ucsc/ucsc_build_sites.txt" skip_startswith="#" id="0" name="0"> + <!-- Define parameters by column from file, allow splitting on builds --> + <dynamic_param name="site_id" value="0"/> + <dynamic_param name="ucsc_link" value="1"/> + <dynamic_param name="builds" value="2" split="True" separator="," /> + <!-- Filter out some of the links based upon matching site_id to a Galaxy application configuration parameter and by dataset dbkey --> + <filter>${site_id in $APP.config.ucsc_display_sites}</filter> + <filter>${dataset.dbkey in $builds}</filter> + <!-- We define url and params as normal, but values defined in dynamic_param are available by specified name --> + <url>${ucsc_link}db=${qp($bigwig_file.dbkey)}&hgt.customText=${qp($track.url)}</url> + <param type="data" name="bigwig_file" url="galaxy_${DATASET_HASH}.bigwig" strip_https="False" /> + <param type="template" name="track" viewable="True" strip_https="False">track type=bigWig name="${bigwig_file.name}" bigDataUrl=${bigwig_file.url} db=${bigwig_file.dbkey}</param> + </dynamic_links> +</display>