# HG changeset patch # User rico # Date 1333652888 14400 # Node ID af482edf0b712190a4eeb73bbf443763ad4dc822 # Parent e49ab320694a3d722651f1a9a9ec6b069fbe6e69 Uploaded diff -r e49ab320694a -r af482edf0b71 coverage_distributions.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/coverage_distributions.xml Thu Apr 05 15:08:08 2012 -0400 @@ -0,0 +1,75 @@ + + distributions + + + coverage_distributions.py "$input" "0" "$output" "$output.extra_files_path" + #if $individuals.choice == '0' + "all_individuals" + #else if $individuals.choice == '1' + #set $arg = 'individuals:%s' % str($individuals.p1_input) + "$arg" + #else if $individuals.choice == '2' + #for $population in $individuals.populations + #set $arg = 'population:%s:%s' % (str($population.p_input), str($population.p_input.name)) + "$arg" + #end for + #end if + #for $individual, $individual_col in zip($input.dataset.metadata.individual_names, $input.dataset.metadata.individual_columns) + #set $individual_arg = 'individual:%s:%s' % ($individual_col, $individual) + "$individual_arg" + #end for + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +**What it does** + +This tool reports distributions of SNP reliability indicators for +individuals or populations. The reliability is measured by the sequence +coverage. Textual and graphical reports are generated, where the text +output gives the cumulative distributions. + + +