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annotate evaluate_population_numbers.bash @ 0:99a67ac88802 default tip
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| author | rico |
|---|---|
| date | Thu, 05 Apr 2012 14:22:50 -0400 |
| parents | |
| children |
| rev | line source |
|---|---|
| 0 | 1 #!/usr/bin/env bash |
| 2 | |
| 3 if [ $# -ne 3 ]; then | |
| 4 echo "usage" | |
| 5 exit 1 | |
| 6 fi | |
| 7 | |
| 8 input_ped_file="$1" | |
| 9 output_file="$2" | |
| 10 max_populations="$3" | |
| 11 | |
| 12 ADMIXTURE=admixture | |
| 13 | |
| 14 for (( i=1; $i <= $max_populations; i++ )); do | |
| 15 $ADMIXTURE --cv "$input_ped_file" $i 2>&1 | grep CV >> "$output_file" | |
| 16 done | |
| 17 |