|
0
|
1 <display id="ucsc_bigwig_pos" version="1.0.0" name="display at UCSC">
|
|
|
2 <!-- Load links from file: one line to one link -->
|
|
|
3 <dynamic_links from_file="tool-data/shared/ucsc/ucsc_build_sites.txt" skip_startswith="#" id="0" name="0">
|
|
|
4 <!-- Define parameters by column from file, allow splitting on builds -->
|
|
|
5 <dynamic_param name="site_id" value="0"/>
|
|
|
6 <dynamic_param name="ucsc_link" value="1"/>
|
|
|
7 <dynamic_param name="builds" value="2" split="True" separator="," />
|
|
|
8 <!-- Filter out some of the links based upon matching site_id to a Galaxy application configuration parameter and by dataset dbkey -->
|
|
|
9 <filter>${site_id in $APP.config.ucsc_display_sites}</filter>
|
|
|
10 <filter>${dataset.dbkey in $builds}</filter>
|
|
|
11 <!-- We define url and params as normal, but values defined in dynamic_param are available by specified name -->
|
|
|
12 <url>${ucsc_link}db=${qp($bigwig_file.dbkey)}&hgt.customText=${qp($track.url)}</url>
|
|
|
13 <param type="data" name="bigwig_file" url="galaxy_${DATASET_HASH}.bigwig" strip_https="False" />
|
|
|
14 <param type="template" name="track" viewable="True" strip_https="False">track type=bigWig name="${bigwig_file.name}" bigDataUrl=${bigwig_file.url} db=${bigwig_file.dbkey}</param>
|
|
|
15 </dynamic_links>
|
|
|
16 </display>
|
