view display_applications/bigwig_pos.xml @ 0:939c20789501 default tip

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<display id="ucsc_bigwig_pos" version="1.0.0" name="display at UCSC">
    <!-- Load links from file: one line to one link -->
    <dynamic_links from_file="tool-data/shared/ucsc/ucsc_build_sites.txt" skip_startswith="#" id="0" name="0">
        <!-- Define parameters by column from file, allow splitting on builds -->
        <dynamic_param name="site_id" value="0"/>
        <dynamic_param name="ucsc_link" value="1"/>
        <dynamic_param name="builds" value="2" split="True" separator="," />
        <!-- Filter out some of the links based upon matching site_id to a Galaxy application configuration parameter and by dataset dbkey -->
        <filter>${site_id in $APP.config.ucsc_display_sites}</filter>
        <filter>${dataset.dbkey in $builds}</filter>
        <!-- We define url and params as normal, but values defined in dynamic_param are available by specified name -->
        <url>${ucsc_link}db=${qp($bigwig_file.dbkey)}&amp;hgt.customText=${qp($track.url)}</url>
        <param type="data" name="bigwig_file" url="galaxy_${DATASET_HASH}.bigwig" strip_https="False" />
        <param type="template" name="track" viewable="True" strip_https="False">track type=bigWig name="${bigwig_file.name}" bigDataUrl=${bigwig_file.url} db=${bigwig_file.dbkey}</param>
    </dynamic_links>
</display>