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comparison README @ 0:c3ba43704319 draft default tip

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author rico
date Wed, 12 Sep 2012 14:35:13 -0400
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1 Source code for the executables needed by these tools can be found in
2 the genome_diversity directory.
3
4 Additionally, you'll need the following python modules:
5 matplotlib (we used version 1.1.0) http://pypi.python.org/packages/source/m/matplotlib/
6 mechanize (we used version 0.2.5) http://pypi.python.org/packages/source/m/mechanize/
7 networkx (we used version 1.6) http://pypi.python.org/packages/source/n/networkx/
8
9 And the following software:
10 ADMIXTURE (we used version 1.22) http://www.genetics.ucla.edu/software/admixture/
11 EIGENSOFT (we used version 3.0) http://genepath.med.harvard.edu/~reich/Software.htm
12 PHAST (we used version 1.2.1) http://compgen.bscb.cornell.edu/phast/
13 QuickTree (we used version 1.1) http://www.sanger.ac.uk/resources/software/quicktree/