view galaxy-tools/biobank/utils/prepare_enrollments_import.xml @ 0:ba6cf6ede027 draft default tip

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<tool id="prepare_enrollments_import"
      name="VLUTIL.prepare_enrollments_import">

    <description>
        Prepare input files for enrollments import workflow
    </description>

    <command interpreter="bash">
        launcher.sh
        --interpreter=python
        --runner=prepare_enrollments_import.py
        --logfile=${log_file}
        --in-file=${in_file}
        --out-enrollments=${enrs_out}

    </command>

    <inputs>
        <param format="tabular" name="in_file" type="data"
               label="input TSV file"/>
    </inputs>

    <outputs>
        <data format="txt" name="log_file"
              label="${tool.name}.log"/>
        <data format="tabular" name="enrs_out"
              label="${tool.name}_enrollments.tsv"/>
    </outputs>

    <help>
Split a file like::

  source                              enrollment
  V044DE795E7F9F42FEB9855288CF577A77  ASTUDY:2141
  V06C59B915C0FD47DABE6AE02C731780AF  BSTUDY:390

into two separated  a new TSV files

  source                              study  label
  V044DE795E7F9F42FEB9855288CF577A77  ASTUDY 2141
  V06C59B915C0FD47DABE6AE02C731780AF  BSTUDY 390

    </help>

</tool>