diff galaxy-tools/biobank/utils/prepare_enrollments_import.xml @ 0:ba6cf6ede027 draft default tip

Uploaded

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/galaxy-tools/biobank/utils/prepare_enrollments_import.xml	Wed Sep 28 06:03:30 2016 -0400
@@ -0,0 +1,45 @@
+<tool id="prepare_enrollments_import"
+      name="VLUTIL.prepare_enrollments_import">
+
+    <description>
+        Prepare input files for enrollments import workflow
+    </description>
+
+    <command interpreter="bash">
+        launcher.sh
+        --interpreter=python
+        --runner=prepare_enrollments_import.py
+        --logfile=${log_file}
+        --in-file=${in_file}
+        --out-enrollments=${enrs_out}
+
+    </command>
+
+    <inputs>
+        <param format="tabular" name="in_file" type="data"
+               label="input TSV file"/>
+    </inputs>
+
+    <outputs>
+        <data format="txt" name="log_file"
+              label="${tool.name}.log"/>
+        <data format="tabular" name="enrs_out"
+              label="${tool.name}_enrollments.tsv"/>
+    </outputs>
+
+    <help>
+Split a file like::
+
+  source                              enrollment
+  V044DE795E7F9F42FEB9855288CF577A77  ASTUDY:2141
+  V06C59B915C0FD47DABE6AE02C731780AF  BSTUDY:390
+
+into two separated  a new TSV files
+
+  source                              study  label
+  V044DE795E7F9F42FEB9855288CF577A77  ASTUDY 2141
+  V06C59B915C0FD47DABE6AE02C731780AF  BSTUDY 390
+
+    </help>
+
+</tool>