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1 #!/bin/sh
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2
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3 CMD=""
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4 PYTH_PATH="PYTHONPATH=/SHARE/USERFS/els7/users/galaxy/develop/usr-cluster/lib/p\
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5 ython2.7/site-packages/:/SHARE/USERFS/els7/users/biobank/lib/"
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6 runner="$(dirname ${BASH_SOURCE[0]})/"
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7 until [ -z $1 ]
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8 do
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9
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10 opt_host='--host='
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11 opt_interpreter='--interpreter='
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12 opt_runner='--runner='
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13 if [[ $1 == $opt_host* ]]; then
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14 PYTH_PATH+=`echo $1 | cut -d '=' -f2 | cut -d '.' -f1`
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15 CMD+=' '$1
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16 elif [[ $1 == $opt_runner* ]]; then
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17 runner+=`echo $1 | cut -d '=' -f2`
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18 elif [[ $1 == $opt_interpreter* ]]; then
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19 interpreter=`echo $1 | cut -d '=' -f2`
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20 else
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21 CMD+=' '$1
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22 fi
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23 shift
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24 done
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25 export $PYTH_PATH/:$PYTHONPATH
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26 CMD=$interpreter' '$runner$CMD
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27 $CMD
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