Mercurial > repos > rhpvorderman > shm_csr

view README.md @ 3:dced6d52d218 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload commit bdfa4424496371fbea3edd3de07d8be9d0bad432"
author rhpvorderman
date Mon, 15 Nov 2021 11:35:18 +0000
parents 64d74ba01a7c
children
line wrap: on
line source

# SHM CSR

Somatic hypermutation and class switch recombination pipeline.  
The docker version can be found [here](https://github.com/ErasmusMC-Bioinformatics/ARGalaxy-docker).

# Dependencies
--------------------
[Python 3.7](https://www.python.org/)  
[Change-O](https://changeo.readthedocs.io/en/version-0.4.4/)  
[Baseline](http://selection.med.yale.edu/baseline/)  
[R data.table](https://cran.r-project.org/web/packages/data.table/data.table.pdf)
[R ggplot2](https://cran.r-project.org/web/packages/ggplot2/ggplot2.pdf)
[R reshape2](https://cran.r-project.org/web/packages/reshape/reshape.pdf)