Mercurial > repos > rhpvorderman > shm_csr

view README.md @ 5:495a521cf9f2 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload commit 40d62ec3d2fea3c3bac605c976941e1f3b7e2cd4"
author rhpvorderman
date Tue, 16 Nov 2021 11:16:06 +0000
parents 64d74ba01a7c
children
line wrap: on
line source

# SHM CSR

Somatic hypermutation and class switch recombination pipeline.  
The docker version can be found [here](https://github.com/ErasmusMC-Bioinformatics/ARGalaxy-docker).

# Dependencies
--------------------
[Python 3.7](https://www.python.org/)  
[Change-O](https://changeo.readthedocs.io/en/version-0.4.4/)  
[Baseline](http://selection.med.yale.edu/baseline/)  
[R data.table](https://cran.r-project.org/web/packages/data.table/data.table.pdf)
[R ggplot2](https://cran.r-project.org/web/packages/ggplot2/ggplot2.pdf)
[R reshape2](https://cran.r-project.org/web/packages/reshape/reshape.pdf)