Mercurial > repos > rhpvorderman > shm_csr

diff shm_csr.xml @ 2:72d68e2e1fd3 draft

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"planemo upload commit a8565b413cbe0ef70bc22994ecdd48b400ba6185"
author rhpvorderman
date Fri, 05 Nov 2021 14:43:13 +0000
parents 281329c035ee
children dced6d52d218
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--- a/shm_csr.xml	Fri Nov 05 10:59:28 2021 +0000
+++ b/shm_csr.xml	Fri Nov 05 14:43:13 2021 +0000
@@ -1,5 +1,5 @@
-<tool id="shm_csr" name="SHM &amp; CSR pipeline" version="1.2.2">
-	<description>Performs a summary/analysis of an IMGT HighV-QUEST (https://www.imgt.org/HighV-QUEST/) ZIP file for Somatic hypermutation and class switch recombination.</description>
+<tool id="shm_csr" name="SHM &amp; CSR pipeline" version="1.3.1">
+	<description></description>
 	<requirements>
 		<requirement type="package" version="3.7.1">python</requirement>
 		<requirement type="package" version="0.4.4">changeo</requirement>
@@ -16,7 +16,9 @@
 		<requirement type="package" version="4.4.18">bash</requirement>
 		<requirement type="package" version="1.34">tar</requirement>
 		<requirement type="package" version="5.39">file</requirement>
-		</requirements>
+		<requirement type="package" version="4.6.0">findutils</requirement>
+		<requirement type="package" version="1.07.1">bc</requirement>
+	</requirements>
 	<command interpreter="bash">
 		#if str ( $filter_unique.filter_unique_select ) == "remove":
 			wrapper.sh $in_file custom $out_file $out_file.files_path "${in_file.name}" "-" $functionality $unique $naive_output_cond.naive_output $naive_output_ca $naive_output_cg $naive_output_cm $naive_output_ce $naive_output_all $filter_unique.filter_unique_select $filter_unique.filter_unique_clone_count $class_filter_cond.class_filter $empty_region_filter $fast