Mercurial > repos > rhpvorderman > shm_csr

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author rhpvorderman
date Wed, 27 Oct 2021 12:34:47 +0000
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+# SHM CSR
+
+Somatic hypermutation and class switch recombination pipeline.  
+The docker version can be found [here](https://github.com/ErasmusMC-Bioinformatics/ARGalaxy-docker).
+
+# Dependencies
+--------------------
+[Python 3.7](https://www.python.org/)  
+[Change-O](https://changeo.readthedocs.io/en/version-0.4.4/)  
+[Baseline](http://selection.med.yale.edu/baseline/)  
+[R data.table](https://cran.r-project.org/web/packages/data.table/data.table.pdf)
+[R ggplot2](https://cran.r-project.org/web/packages/ggplot2/ggplot2.pdf)
+[R reshape2](https://cran.r-project.org/web/packages/reshape/reshape.pdf)