Mercurial > repos > rhpvorderman > shm_csr
comparison wrapper.sh @ 3:dced6d52d218 draft
"planemo upload commit bdfa4424496371fbea3edd3de07d8be9d0bad432"
| author | rhpvorderman |
|---|---|
| date | Mon, 15 Nov 2021 11:35:18 +0000 |
| parents | 72d68e2e1fd3 |
| children |
comparison
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| 2:72d68e2e1fd3 | 3:dced6d52d218 |
|---|---|
| 893 IFS="$tIFS" | 893 IFS="$tIFS" |
| 894 | 894 |
| 895 echo "---------------- remove_files----------------" | 895 echo "---------------- remove_files----------------" |
| 896 echo "---------------- remove_files----------------<br />" >> $log | 896 echo "---------------- remove_files----------------<br />" >> $log |
| 897 | 897 |
| 898 rm -r -v -f results/baseline | 898 rm -r -v -f $outdir/baseline |
| 899 rm -r -v -f files | 899 rm -r -v -f $PWD/files |
| 900 filename='remove_files.txt' | 900 rm -v $PWD/aa.txt |
| 901 rm -v $PWD/aa_change_stats.txt | |
| 902 rm -v $PWD/gapped_aa.txt | |
| 903 rm -v $PWD/gapped_nt.txt | |
| 904 rm -v $PWD/hotspots.txt | |
| 905 rm -v $PWD/junction.txt | |
| 906 rm -v $PWD/mutationanalysis.txt | |
| 907 rm -v $PWD/mutationstats.txt | |
| 908 rm -v $PWD/sequences.txt | |
| 909 rm -v $PWD/summary.txt | |
| 910 rm -v $PWD/Rplots.pdf | |
| 911 | |
| 912 filename="$dir/remove_files.txt" | |
| 901 | 913 |
| 902 while read file; do | 914 while read file; do |
| 903 rm -v -f $file | 915 rm -v -f $outdir/$file |
| 904 done < "$filename" | 916 done < "$filename" |
| 905 | |
| 906 | 917 |
| 907 echo "---------------- Done! ----------------" | 918 echo "---------------- Done! ----------------" |
| 908 echo "---------------- Done! ----------------<br />" >> $outdir/log.html | 919 echo "---------------- Done! ----------------<br />" >> $outdir/log.html |
| 909 | 920 |
| 910 | 921 |