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comparison shm_selection.htm @ 4:c8f02bce10d0 draft

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"planemo upload commit 05326cc2233eb0fa8beaf4198bd7c1519f2a0bf9"
author rhpvorderman
date Mon, 15 Nov 2021 14:04:10 +0000
parents 64d74ba01a7c
children 495a521cf9f2
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3:dced6d52d218 4:c8f02bce10d0
53 <p class=MsoNormalCxSpMiddle style='text-align:justify'><span lang=EN-GB 53 <p class=MsoNormalCxSpMiddle style='text-align:justify'><span lang=EN-GB
54 style='font-size:12.0pt;line-height:115%;font-family:"Times New Roman","serif"; 54 style='font-size:12.0pt;line-height:115%;font-family:"Times New Roman","serif";
55 color:black'>Yaari, G. and Uduman, M. and Kleinstein, S. H. (2012). Quantifying 55 color:black'>Yaari, G. and Uduman, M. and Kleinstein, S. H. (2012). Quantifying
56 selection in high-throughput Immunoglobulin sequencing data sets. In<span 56 selection in high-throughput Immunoglobulin sequencing data sets. In<span
57 class=apple-converted-space>&nbsp;</span><em>Nucleic Acids Research, 40 (17), 57 class=apple-converted-space>&nbsp;</span><em>Nucleic Acids Research, 40 (17),
58 pp. e134–e134.</em><span class=apple-converted-space><i>&nbsp;</i></span>[</span><span 58 pp. e134–e134.</em><span class=apple-converted-space><i>&nbsp;</i></span>[</span><span
59 lang=EN-GB><a href="http://dx.doi.org/10.1093/nar/gks457" target="_blank"><span 59 lang=EN-GB><a href="http://dx.doi.org/10.1093/nar/gks457" target="_blank"><span
60 style='font-size:12.0pt;line-height:115%;font-family:"Times New Roman","serif"; 60 style='font-size:12.0pt;line-height:115%;font-family:"Times New Roman","serif";
61 color:#303030'>doi:10.1093/nar/gks457</span></a></span><span lang=EN-GB 61 color:#303030'>doi:10.1093/nar/gks457</span></a></span><span lang=EN-GB
62 style='font-size:12.0pt;line-height:115%;font-family:"Times New Roman","serif"; 62 style='font-size:12.0pt;line-height:115%;font-family:"Times New Roman","serif";
63 color:black'>][</span><span lang=EN-GB><a 63 color:black'>][</span><span lang=EN-GB><a
92 the results of the analysis of antigen selection as performed using BASELINe. 92 the results of the analysis of antigen selection as performed using BASELINe.
93 Details on the analysis performed by BASELINe can be found in Yaari et al, 93 Details on the analysis performed by BASELINe can be found in Yaari et al,
94 PMID: 22641856. The settings used for the analysis are</span><span lang=EN-GB 94 PMID: 22641856. The settings used for the analysis are</span><span lang=EN-GB
95 style='font-size:12.0pt;line-height:115%;font-family:"Times New Roman","serif"'>: 95 style='font-size:12.0pt;line-height:115%;font-family:"Times New Roman","serif"'>:
96 focused, SHM targeting model: human Tri-nucleotide, custom bounderies. The 96 focused, SHM targeting model: human Tri-nucleotide, custom bounderies. The
97 custom boundries are dependent on the ‘sequence starts at filter’. </span></p> 97 custom boundries are dependent on the ‘sequence starts at filter’. </span></p>
98 98
99 <p class=MsoNormalCxSpMiddle style='line-height:normal'><span lang=NL 99 <p class=MsoNormalCxSpMiddle style='line-height:normal'><span lang=NL
100 style='font-family:UICTFontTextStyleBody;color:black'>Leader: 100 style='font-family:UICTFontTextStyleBody;color:black'>Leader:
101 1:26:38:55:65:104:-</span></p> 101 1:26:38:55:65:104:-</span></p>
102 102