Mercurial > repos > rhpvorderman > data_manager_select_index_by_path

annotate tool-data/bwameth_indexes.loc.sample @ 39:ad5d85570342 draft default tip

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planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit a9b8c9549044fb951570d9c6cf88107d98800afb
author rhpvorderman
date Wed, 25 Jul 2018 10:34:49 -0400
parents afd01fcbea26
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afd01fcbea26 planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit 5db36ba46db15647fd3206c23114b7671e4b4f79
rhpvorderman
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1 # This is a sample file distributed with Galaxy that is used to define a
afd01fcbea26 planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit 5db36ba46db15647fd3206c23114b7671e4b4f79
rhpvorderman
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2 # list of bwa-meth indices, using three columns tab separated:
afd01fcbea26 planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit 5db36ba46db15647fd3206c23114b7671e4b4f79
rhpvorderman
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3 #
afd01fcbea26 planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit 5db36ba46db15647fd3206c23114b7671e4b4f79
rhpvorderman
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4 # <unique_build_id> <dbkey> <display_name> <genome_fasta_file_path>
afd01fcbea26 planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit 5db36ba46db15647fd3206c23114b7671e4b4f79
rhpvorderman
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5 #
afd01fcbea26 planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit 5db36ba46db15647fd3206c23114b7671e4b4f79
rhpvorderman
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6 # An index can be created with the following command:
afd01fcbea26 planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit 5db36ba46db15647fd3206c23114b7671e4b4f79
rhpvorderman
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7 #
afd01fcbea26 planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit 5db36ba46db15647fd3206c23114b7671e4b4f79
rhpvorderman
parents:
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8 # bwameth.py index /some/path/genome.fa
afd01fcbea26 planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit 5db36ba46db15647fd3206c23114b7671e4b4f79
rhpvorderman
parents:
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9 #
afd01fcbea26 planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit 5db36ba46db15647fd3206c23114b7671e4b4f79
rhpvorderman
parents:
diff changeset
10 # "/some/path/genome.fa" would then be the last column in the line
afd01fcbea26 planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit 5db36ba46db15647fd3206c23114b7671e4b4f79
rhpvorderman
parents:
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11 # If this were for the mm10 mouse genome, the resulting entry would look like:
afd01fcbea26 planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit 5db36ba46db15647fd3206c23114b7671e4b4f79
rhpvorderman
parents:
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12 #
afd01fcbea26 planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit 5db36ba46db15647fd3206c23114b7671e4b4f79
rhpvorderman
parents:
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13 #mm9 mm9 Mouse (mm9) /some/path/genome.fa
afd01fcbea26 planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit 5db36ba46db15647fd3206c23114b7671e4b4f79
rhpvorderman
parents:
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14 #
afd01fcbea26 planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit 5db36ba46db15647fd3206c23114b7671e4b4f79
rhpvorderman
parents:
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15 #