Mercurial > repos > rhpvorderman > data_manager_select_index_by_path
annotate data_manager/indexes.yml @ 8:2fa5adc7f273 draft
planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit c22af79f25e13690d86cfc8bca0b99a424a6822f
author | rhpvorderman |
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date | Mon, 11 Sep 2017 07:18:48 -0400 |
parents | 462dc2bde908 |
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rev | line source |
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1abe9fb7c454
planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit 9a42a858c5039edd1062e7a8a315c91c2c213000
rhpvorderman
parents:
diff
changeset
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1 all_fasta: |
1abe9fb7c454
planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit 9a42a858c5039edd1062e7a8a315c91c2c213000
rhpvorderman
parents:
diff
changeset
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2 name: fasta file |
1abe9fb7c454
planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit 9a42a858c5039edd1062e7a8a315c91c2c213000
rhpvorderman
parents:
diff
changeset
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3 extensions: |
1abe9fb7c454
planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit 9a42a858c5039edd1062e7a8a315c91c2c213000
rhpvorderman
parents:
diff
changeset
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4 - .fa |
1abe9fb7c454
planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit 9a42a858c5039edd1062e7a8a315c91c2c213000
rhpvorderman
parents:
diff
changeset
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5 bowtie2_indexes: |
1abe9fb7c454
planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit 9a42a858c5039edd1062e7a8a315c91c2c213000
rhpvorderman
parents:
diff
changeset
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6 name: bowtie2 index |
1abe9fb7c454
planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit 9a42a858c5039edd1062e7a8a315c91c2c213000
rhpvorderman
parents:
diff
changeset
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7 extensions: |
1abe9fb7c454
planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit 9a42a858c5039edd1062e7a8a315c91c2c213000
rhpvorderman
parents:
diff
changeset
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8 - .bt2 |
1abe9fb7c454
planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit 9a42a858c5039edd1062e7a8a315c91c2c213000
rhpvorderman
parents:
diff
changeset
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9 bowtie_indexes: |
1abe9fb7c454
planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit 9a42a858c5039edd1062e7a8a315c91c2c213000
rhpvorderman
parents:
diff
changeset
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10 name: bowtie index |
1abe9fb7c454
planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit 9a42a858c5039edd1062e7a8a315c91c2c213000
rhpvorderman
parents:
diff
changeset
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11 extensions: |
1abe9fb7c454
planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit 9a42a858c5039edd1062e7a8a315c91c2c213000
rhpvorderman
parents:
diff
changeset
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12 - .ebwt |
1abe9fb7c454
planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit 9a42a858c5039edd1062e7a8a315c91c2c213000
rhpvorderman
parents:
diff
changeset
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13 bowtie_indexes_color: |
1abe9fb7c454
planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit 9a42a858c5039edd1062e7a8a315c91c2c213000
rhpvorderman
parents:
diff
changeset
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14 name: bowtie color index |
1abe9fb7c454
planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit 9a42a858c5039edd1062e7a8a315c91c2c213000
rhpvorderman
parents:
diff
changeset
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15 extensions: |
1abe9fb7c454
planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit 9a42a858c5039edd1062e7a8a315c91c2c213000
rhpvorderman
parents:
diff
changeset
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16 - .ebwt |
1abe9fb7c454
planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit 9a42a858c5039edd1062e7a8a315c91c2c213000
rhpvorderman
parents:
diff
changeset
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17 bwa_mem_indexes: |
1abe9fb7c454
planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit 9a42a858c5039edd1062e7a8a315c91c2c213000
rhpvorderman
parents:
diff
changeset
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18 name: bwa mem index |
1abe9fb7c454
planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit 9a42a858c5039edd1062e7a8a315c91c2c213000
rhpvorderman
parents:
diff
changeset
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19 extensions: |
1abe9fb7c454
planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit 9a42a858c5039edd1062e7a8a315c91c2c213000
rhpvorderman
parents:
diff
changeset
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20 - .amb |
1abe9fb7c454
planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit 9a42a858c5039edd1062e7a8a315c91c2c213000
rhpvorderman
parents:
diff
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21 - .ann |
1abe9fb7c454
planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit 9a42a858c5039edd1062e7a8a315c91c2c213000
rhpvorderman
parents:
diff
changeset
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22 - .bwt |
1abe9fb7c454
planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit 9a42a858c5039edd1062e7a8a315c91c2c213000
rhpvorderman
parents:
diff
changeset
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23 - .pac |
1abe9fb7c454
planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit 9a42a858c5039edd1062e7a8a315c91c2c213000
rhpvorderman
parents:
diff
changeset
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24 - .sa |
1abe9fb7c454
planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit 9a42a858c5039edd1062e7a8a315c91c2c213000
rhpvorderman
parents:
diff
changeset
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25 bwameth_indexes: |
1abe9fb7c454
planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit 9a42a858c5039edd1062e7a8a315c91c2c213000
rhpvorderman
parents:
diff
changeset
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26 name: bwa_meth_index |
1abe9fb7c454
planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit 9a42a858c5039edd1062e7a8a315c91c2c213000
rhpvorderman
parents:
diff
changeset
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27 fasta_indexes: |
1abe9fb7c454
planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit 9a42a858c5039edd1062e7a8a315c91c2c213000
rhpvorderman
parents:
diff
changeset
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28 name: fasta index |
1abe9fb7c454
planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit 9a42a858c5039edd1062e7a8a315c91c2c213000
rhpvorderman
parents:
diff
changeset
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29 extensions: |
1abe9fb7c454
planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit 9a42a858c5039edd1062e7a8a315c91c2c213000
rhpvorderman
parents:
diff
changeset
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30 - .fai |
1abe9fb7c454
planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit 9a42a858c5039edd1062e7a8a315c91c2c213000
rhpvorderman
parents:
diff
changeset
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31 gatk_picard_index: |
1abe9fb7c454
planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit 9a42a858c5039edd1062e7a8a315c91c2c213000
rhpvorderman
parents:
diff
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32 name: picard index for GATK |
1abe9fb7c454
planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit 9a42a858c5039edd1062e7a8a315c91c2c213000
rhpvorderman
parents:
diff
changeset
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33 gene_transfer: |
1abe9fb7c454
planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit 9a42a858c5039edd1062e7a8a315c91c2c213000
rhpvorderman
parents:
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34 name: Gene Transfer File |
1abe9fb7c454
planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit 9a42a858c5039edd1062e7a8a315c91c2c213000
rhpvorderman
parents:
diff
changeset
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35 extensions: |
1abe9fb7c454
planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit 9a42a858c5039edd1062e7a8a315c91c2c213000
rhpvorderman
parents:
diff
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36 - .gtf |
1abe9fb7c454
planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit 9a42a858c5039edd1062e7a8a315c91c2c213000
rhpvorderman
parents:
diff
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37 hisat2_indexes: |
1abe9fb7c454
planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit 9a42a858c5039edd1062e7a8a315c91c2c213000
rhpvorderman
parents:
diff
changeset
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38 name: hisat2 index |
1abe9fb7c454
planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit 9a42a858c5039edd1062e7a8a315c91c2c213000
rhpvorderman
parents:
diff
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39 extensions: |
1abe9fb7c454
planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit 9a42a858c5039edd1062e7a8a315c91c2c213000
rhpvorderman
parents:
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40 - .ht2 |
1abe9fb7c454
planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit 9a42a858c5039edd1062e7a8a315c91c2c213000
rhpvorderman
parents:
diff
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41 kallisto_indexes: |
1abe9fb7c454
planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit 9a42a858c5039edd1062e7a8a315c91c2c213000
rhpvorderman
parents:
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42 name: kallisto index |
1abe9fb7c454
planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit 9a42a858c5039edd1062e7a8a315c91c2c213000
rhpvorderman
parents:
diff
changeset
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43 picard_indexes: |
1abe9fb7c454
planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit 9a42a858c5039edd1062e7a8a315c91c2c213000
rhpvorderman
parents:
diff
changeset
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44 name: picard index |
1abe9fb7c454
planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit 9a42a858c5039edd1062e7a8a315c91c2c213000
rhpvorderman
parents:
diff
changeset
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45 tophat2_indexes: |
1abe9fb7c454
planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit 9a42a858c5039edd1062e7a8a315c91c2c213000
rhpvorderman
parents:
diff
changeset
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46 name: tophat2 index |
1abe9fb7c454
planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit 9a42a858c5039edd1062e7a8a315c91c2c213000
rhpvorderman
parents:
diff
changeset
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47 extensions: |
1abe9fb7c454
planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit 9a42a858c5039edd1062e7a8a315c91c2c213000
rhpvorderman
parents:
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48 - .bt2 |