Mercurial > repos > rhpvorderman > data_manager_select_index_by_path

annotate tool-data/all_fasta.loc.sample @ 2:2898c6feeb9f draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit 8413cc2e2826fa5b7702589f9b26c84e077d599f
author rhpvorderman
date Fri, 08 Sep 2017 08:12:20 -0400
parents 288819f540fd
children afd01fcbea26
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
288819f540fd planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit 3ffb01380e2fe315bf3fe88f97781a83595b3fff
rhpvorderman
parents:
diff changeset
1 #This file lists the locations and dbkeys of all the fasta files
288819f540fd planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit 3ffb01380e2fe315bf3fe88f97781a83595b3fff
rhpvorderman
parents:
diff changeset
2
288819f540fd planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit 3ffb01380e2fe315bf3fe88f97781a83595b3fff
rhpvorderman
parents:
diff changeset
3 #This file has the format (white space characters are TAB characters):
288819f540fd planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit 3ffb01380e2fe315bf3fe88f97781a83595b3fff
rhpvorderman
parents:
diff changeset
4 #
288819f540fd planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit 3ffb01380e2fe315bf3fe88f97781a83595b3fff
rhpvorderman
parents:
diff changeset
5 #<unique_build_id> <dbkey> <display_name> <file_path>
288819f540fd planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit 3ffb01380e2fe315bf3fe88f97781a83595b3fff
rhpvorderman
parents:
diff changeset
6 #
288819f540fd planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit 3ffb01380e2fe315bf3fe88f97781a83595b3fff
rhpvorderman
parents:
diff changeset
7 #So, all_fasta.loc could look something like this:
288819f540fd planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit 3ffb01380e2fe315bf3fe88f97781a83595b3fff
rhpvorderman
parents:
diff changeset
8 #
288819f540fd planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit 3ffb01380e2fe315bf3fe88f97781a83595b3fff
rhpvorderman
parents:
diff changeset
9 #apiMel3 apiMel3 Honeybee (Apis mellifera): apiMel3 /path/to/genome/apiMel3/apiMel3.fa
288819f540fd planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit 3ffb01380e2fe315bf3fe88f97781a83595b3fff
rhpvorderman
parents:
diff changeset
10 #hg19canon hg19 Human (Homo sapiens): hg19 Canonical /path/to/genome/hg19/hg19canon.fa
288819f540fd planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit 3ffb01380e2fe315bf3fe88f97781a83595b3fff
rhpvorderman
parents:
diff changeset
11 #hg19full hg19 Human (Homo sapiens): hg19 Full /path/to/genome/hg19/hg19full.fa
288819f540fd planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit 3ffb01380e2fe315bf3fe88f97781a83595b3fff
rhpvorderman
parents:
diff changeset
12 #
288819f540fd planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit 3ffb01380e2fe315bf3fe88f97781a83595b3fff
rhpvorderman
parents:
diff changeset
13 #Your all_fasta.loc file should contain an entry for each individual
288819f540fd planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit 3ffb01380e2fe315bf3fe88f97781a83595b3fff
rhpvorderman
parents:
diff changeset
14 #fasta file. So there will be multiple fasta files for each build,
288819f540fd planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit 3ffb01380e2fe315bf3fe88f97781a83595b3fff
rhpvorderman
parents:
diff changeset
15 #such as with hg19 above.
288819f540fd planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit 3ffb01380e2fe315bf3fe88f97781a83595b3fff
rhpvorderman
parents:
diff changeset
16 #
288819f540fd planemo upload for repository https://github.com/LUMC/lumc-galaxy-tools/tree/master/data_manager_select_index_by_path commit 3ffb01380e2fe315bf3fe88f97781a83595b3fff
rhpvorderman
parents:
diff changeset
17