Mercurial > repos > rhpvorderman > data_manager_mothur_toolsuite
annotate tool-data/mothur_taxonomy.loc.sample @ 6:b17f2fb4a5cb draft default tip
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit 6c115a41a535feff1e805d3d10f3a39940e5d738"
author | rhpvorderman |
---|---|
date | Tue, 29 Jun 2021 12:36:08 +0000 |
parents | 3f6f7ca5f95a |
children |
rev | line source |
---|---|
0
3f6f7ca5f95a
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit 821349cd1c414dcad2128ba78d2b9d9051b3e75b"
rhpvorderman
parents:
diff
changeset
|
1 #This is a sample file distributed with Galaxy that enables tools |
3f6f7ca5f95a
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit 821349cd1c414dcad2128ba78d2b9d9051b3e75b"
rhpvorderman
parents:
diff
changeset
|
2 #to use a directory of metagenomics files. |
3f6f7ca5f95a
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit 821349cd1c414dcad2128ba78d2b9d9051b3e75b"
rhpvorderman
parents:
diff
changeset
|
3 #file has this format (white space characters are TAB characters): |
3f6f7ca5f95a
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit 821349cd1c414dcad2128ba78d2b9d9051b3e75b"
rhpvorderman
parents:
diff
changeset
|
4 # |
3f6f7ca5f95a
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit 821349cd1c414dcad2128ba78d2b9d9051b3e75b"
rhpvorderman
parents:
diff
changeset
|
5 # Silva reference files: http://www.mothur.org/wiki/Silva_reference_files |
3f6f7ca5f95a
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit 821349cd1c414dcad2128ba78d2b9d9051b3e75b"
rhpvorderman
parents:
diff
changeset
|
6 # |
3f6f7ca5f95a
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit 821349cd1c414dcad2128ba78d2b9d9051b3e75b"
rhpvorderman
parents:
diff
changeset
|
7 #<taxonomyname> <file_base> |
3f6f7ca5f95a
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit 821349cd1c414dcad2128ba78d2b9d9051b3e75b"
rhpvorderman
parents:
diff
changeset
|
8 # |
3f6f7ca5f95a
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit 821349cd1c414dcad2128ba78d2b9d9051b3e75b"
rhpvorderman
parents:
diff
changeset
|
9 #archaea.gg /project/db/galaxy/mothur/Silva.archaea/silva.archaea.gg.tax |
3f6f7ca5f95a
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit 821349cd1c414dcad2128ba78d2b9d9051b3e75b"
rhpvorderman
parents:
diff
changeset
|
10 #archaea.silva /project/db/galaxy/mothur/Silva.archaea/silva.archaea.silva.tax |
3f6f7ca5f95a
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit 821349cd1c414dcad2128ba78d2b9d9051b3e75b"
rhpvorderman
parents:
diff
changeset
|
11 #archaea.rdp /project/db/galaxy/mothur/Silva.archaea/silva.archaea.rdp.tax |
3f6f7ca5f95a
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit 821349cd1c414dcad2128ba78d2b9d9051b3e75b"
rhpvorderman
parents:
diff
changeset
|
12 #archaea.ncbi /project/db/galaxy/mothur/Silva.archaea/silva.archaea.ncbi.tax |
3f6f7ca5f95a
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit 821349cd1c414dcad2128ba78d2b9d9051b3e75b"
rhpvorderman
parents:
diff
changeset
|
13 #bacteria.gg /project/db/galaxy/mothur/silva.bacteria/silva.bacteria.gg.tax |
3f6f7ca5f95a
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit 821349cd1c414dcad2128ba78d2b9d9051b3e75b"
rhpvorderman
parents:
diff
changeset
|
14 #bacteria.silva /project/db/galaxy/mothur/silva.bacteria/silva.bacteria.silva.tax |
3f6f7ca5f95a
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit 821349cd1c414dcad2128ba78d2b9d9051b3e75b"
rhpvorderman
parents:
diff
changeset
|
15 #bacteria.ncbi /project/db/galaxy/mothur/silva.bacteria/silva.bacteria.ncbi.tax |
3f6f7ca5f95a
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit 821349cd1c414dcad2128ba78d2b9d9051b3e75b"
rhpvorderman
parents:
diff
changeset
|
16 #bacteria.rdp /project/db/galaxy/mothur/silva.bacteria/silva.bacteria.rdp.tax |
3f6f7ca5f95a
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit 821349cd1c414dcad2128ba78d2b9d9051b3e75b"
rhpvorderman
parents:
diff
changeset
|
17 #bacteria.rdp6 /project/db/galaxy/mothur/silva.bacteria/silva.bacteria.rdp6.tax |
3f6f7ca5f95a
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit 821349cd1c414dcad2128ba78d2b9d9051b3e75b"
rhpvorderman
parents:
diff
changeset
|
18 #eukarya.silva /project/db/galaxy/mothur/silva.eukarya.silva.tax |
3f6f7ca5f95a
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit 821349cd1c414dcad2128ba78d2b9d9051b3e75b"
rhpvorderman
parents:
diff
changeset
|
19 #eukarya.ncbi /project/db/galaxy/mothur/silva.eukarya.ncbi.tax |
3f6f7ca5f95a
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit 821349cd1c414dcad2128ba78d2b9d9051b3e75b"
rhpvorderman
parents:
diff
changeset
|
20 #trainset6_032010.rdp.tax /project/db/galaxy/mothur/RDP/trainset6_032010.rdp.tax |
3f6f7ca5f95a
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit 821349cd1c414dcad2128ba78d2b9d9051b3e75b"
rhpvorderman
parents:
diff
changeset
|
21 #trainset7_112011.pds.tax /project/db/galaxy/mothur/RDP/trainset7_112011.pds.tax |
3f6f7ca5f95a
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit 821349cd1c414dcad2128ba78d2b9d9051b3e75b"
rhpvorderman
parents:
diff
changeset
|
22 #trainset7_112011.rdp.tax /project/db/galaxy/mothur/RDP/trainset7_112011.rdp.tax |
3f6f7ca5f95a
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit 821349cd1c414dcad2128ba78d2b9d9051b3e75b"
rhpvorderman
parents:
diff
changeset
|
23 #FungiLSU_train_1400bp_8506_mod.tax /project/db/galaxy/mothur/RDP/FungiLSU_train_1400bp_8506_mod.tax |
3f6f7ca5f95a
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit 821349cd1c414dcad2128ba78d2b9d9051b3e75b"
rhpvorderman
parents:
diff
changeset
|
24 # |