Mercurial > repos > rhpvorderman > data_manager_mothur_toolsuite
annotate tool-data/mothur_aligndb.loc.sample @ 6:b17f2fb4a5cb draft default tip
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit 6c115a41a535feff1e805d3d10f3a39940e5d738"
| author | rhpvorderman |
|---|---|
| date | Tue, 29 Jun 2021 12:36:08 +0000 |
| parents | 3f6f7ca5f95a |
| children |
| rev | line source |
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3f6f7ca5f95a
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit 821349cd1c414dcad2128ba78d2b9d9051b3e75b"
rhpvorderman
parents:
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changeset
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1 #This is a sample file distributed with Galaxy that enables tools |
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3f6f7ca5f95a
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit 821349cd1c414dcad2128ba78d2b9d9051b3e75b"
rhpvorderman
parents:
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changeset
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2 #to use a directory of metagenomics files. |
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3f6f7ca5f95a
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit 821349cd1c414dcad2128ba78d2b9d9051b3e75b"
rhpvorderman
parents:
diff
changeset
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3 #file has this format (white space characters are TAB characters): |
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3f6f7ca5f95a
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit 821349cd1c414dcad2128ba78d2b9d9051b3e75b"
rhpvorderman
parents:
diff
changeset
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4 # |
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3f6f7ca5f95a
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit 821349cd1c414dcad2128ba78d2b9d9051b3e75b"
rhpvorderman
parents:
diff
changeset
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5 # Reference Alignments: http://www.mothur.org/wiki/Alignment_database |
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3f6f7ca5f95a
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit 821349cd1c414dcad2128ba78d2b9d9051b3e75b"
rhpvorderman
parents:
diff
changeset
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6 # |
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3f6f7ca5f95a
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit 821349cd1c414dcad2128ba78d2b9d9051b3e75b"
rhpvorderman
parents:
diff
changeset
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7 #<dbname> <file_base> |
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3f6f7ca5f95a
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit 821349cd1c414dcad2128ba78d2b9d9051b3e75b"
rhpvorderman
parents:
diff
changeset
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8 # |
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3f6f7ca5f95a
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit 821349cd1c414dcad2128ba78d2b9d9051b3e75b"
rhpvorderman
parents:
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changeset
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9 #greengenes /project/db/galaxy/mothur/core_set_aligned.imputed.fasta |
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3f6f7ca5f95a
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit 821349cd1c414dcad2128ba78d2b9d9051b3e75b"
rhpvorderman
parents:
diff
changeset
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10 #silva archaea /project/db/galaxy/mothur/Silva.archaea/silva.archaea.fasta |
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3f6f7ca5f95a
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit 821349cd1c414dcad2128ba78d2b9d9051b3e75b"
rhpvorderman
parents:
diff
changeset
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11 #silva bacteria /project/db/galaxy/mothur/silva.bacteria/silva.bacteria.fasta |
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3f6f7ca5f95a
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit 821349cd1c414dcad2128ba78d2b9d9051b3e75b"
rhpvorderman
parents:
diff
changeset
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12 #silva eukarya /project/db/galaxy/mothur/silva.eukarya.fasta |
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3f6f7ca5f95a
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit 821349cd1c414dcad2128ba78d2b9d9051b3e75b"
rhpvorderman
parents:
diff
changeset
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13 #silva archaea nogap /project/db/galaxy/mothur/Silva.archaea/nogap.archaea.fasta |
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3f6f7ca5f95a
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit 821349cd1c414dcad2128ba78d2b9d9051b3e75b"
rhpvorderman
parents:
diff
changeset
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14 #silva bacteria nogap /project/db/galaxy/mothur/silva.bacteria/nogap.bacteria.fasta |
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3f6f7ca5f95a
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit 821349cd1c414dcad2128ba78d2b9d9051b3e75b"
rhpvorderman
parents:
diff
changeset
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15 #silva eukarya nogap /project/db/galaxy/mothur/nogap.eukarya.fasta |
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3f6f7ca5f95a
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit 821349cd1c414dcad2128ba78d2b9d9051b3e75b"
rhpvorderman
parents:
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changeset
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16 #FungiLSU_train_1400bp_8506_mod.fasta /project/db/galaxy/mothur/RDP/FungiLSU_train_1400bp_8506_mod.fasta |
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3f6f7ca5f95a
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit 821349cd1c414dcad2128ba78d2b9d9051b3e75b"
rhpvorderman
parents:
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17 #trainset6_032010.rdp.fasta /project/db/galaxy/mothur/RDP/trainset6_032010.rdp.fasta |
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3f6f7ca5f95a
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit 821349cd1c414dcad2128ba78d2b9d9051b3e75b"
rhpvorderman
parents:
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18 #trainset7_112011.pds.fasta /project/db/galaxy/mothur/RDP/trainset7_112011.pds.fasta |
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3f6f7ca5f95a
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_mothur_toolsuite/ commit 821349cd1c414dcad2128ba78d2b9d9051b3e75b"
rhpvorderman
parents:
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19 #trainset7_112011.rdp.fasta /project/db/galaxy/mothur/RDP/trainset7_112011.rdp.fasta |