# HG changeset patch
# User remy-d1
# Date 1362478950 18000
# Node ID ec6fdbac353fd7863a4b8d4fe2046fc68486ab9a

1st upload

diff -r 000000000000 -r ec6fdbac353f display_py.xml
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/display_py.xml	Tue Mar 05 05:22:30 2013 -0500
@@ -0,0 +1,132 @@
+<tool id="display_py" name="display_py" version="0.2" hidden="false" URL_method="post">
+    <description>Use the display.py API browser from galaxy</description>
+
+    <command>
+    #if $__user_email__ in $__app__.config.admin_users
+        #if str($add_path.question) == "yes"
+            #if str($add_path.specific_path) == ""
+                #if str($add_path.out_format) == "tsv"
+                    $__root_dir__/scripts/api/display.py $api_key "$url_path_to_api/$content_type" | tail -n +3 |awk 'BEGIN{ FS="(\n|(name|id|[0-9]):)"; RS="#"; print "Num\tPath\tName\tID"; } /[:alnum:]/ { print NR-1,$2,$4,$6; }' > $display_py
+                #elif str($add_path.out_format) == "txt"
+                    $__root_dir__/scripts/api/display.py $api_key "$url_path_to_api/$content_type" > $display_py
+                #else
+                    print.py $__root_dir__/scripts/api/display.py $api_key "$url_path_to_api/$content_type" true > $display_py
+                #end if
+            #else
+                #if str($add_content.content_id) == ""
+                    #if str($add_path.out_format) == "txt"
+                        $__root_dir__/scripts/api/display.py $api_key "$url_path_to_api/$content_type/$add_path.specific_path/contents" > $display_py
+                    #else
+                        print.py $__root_dir__/scripts/api/display.py $api_key "$url_path_to_api/$content_type/$add_path.specific_path/contents" false > $display_py
+                    #end if
+                #else
+                    #if str($add_path.out_format) == "txt"
+                        $__root_dir__/scripts/api/display.py $api_key "$url_path_to_api/$content_type/$add_path.specific_path/contents/$add_content.content_id" > $display_py
+                    #else
+                        print.py $__root_dir__/scripts/api/display.py $api_key "$url_path_to_api/$content_type/$add_path.specific_path/contents/$add_content.content_id" false > $display_py
+                    #end if
+                #end if
+            #end if
+
+        #else
+            #if str($add_path.out_format) == "tsv"
+                $__root_dir__/scripts/api/display.py $api_key "$url_path_to_api/$content_type" | tail -n +3 |awk 'BEGIN{ FS="(\n|(name|id|[0-9]):)"; RS="#"; print "Num\tPath\tName\tID"; } /[:alnum:]/ { print NR-1,$2,$4,$6; }' > $display_py
+            #elif str($add_path.out_format) == "txt"
+                $__root_dir__/scripts/api/display.py $api_key "$url_path_to_api/$content_type" > $display_py
+            #else
+                print.py $__root_dir__/scripts/api/display.py $api_key "$url_path_to_api/$content_type" true > $display_py
+            #end if
+        #end if
+    #else
+        print.py "Sorry, you are not an admin"
+    #end if
+
+
+    </command>
+
+    <inputs>
+        <param name="api_key" type="text" help="The user's API key (check your database)" optional="false">
+        <!-- ${ __app__.model.User.get( $__user_id__ ).api_keys[0].key } -->
+            <label>The user's key</label>
+        </param>
+        <param name="content_type" type="select" label="The content type">
+            <option value="histories">histories</option>
+            <option value="workflows">workflows</option>
+            <option value="libraries">libraries</option>
+        </param>
+        <param name="url_path_to_api" type="baseurl" value="/api">
+        </param>
+
+        <conditional name="add_path">
+            <param name="question" type="select" label="Add a specific path ID ?">
+                <option value="yes">Yes</option>
+                <option value="no" selected="true">No</option>
+            </param>
+            <when value="yes">
+                <param name="specific_path" type="text" help="The ID to a specific [ workflow | history | library ]" optional="true">
+                    <label>The galaxy specific id to access a [ workflow | history | library ]</label>
+                </param>
+                <param name="out_format" type="select" help="The output format (.tsv is available if there is no specific path)" label="The output format">
+                    <option value="html">html</option>
+                    <option value="txt">txt</option>
+                </param>
+            </when>
+            <when value="no">
+                <param name="out_format" type="select" help="The output format (.tsv is available if there is no specific path)" label="The output format">
+                    <option value="tsv">tsv</option>
+                    <option value="html">html</option>
+                    <option value="txt">txt</option>
+                </param>
+            </when>
+        </conditional>
+
+        <conditional name="add_content">
+            <param name="contents" type="boolean"  truevalue="true" falsevalue="false" label="View content (if you choose a specific ID previously.)">
+            </param>
+            <when value="true">
+                <param name="content_id" type="text" help="The id of the specific content you want" optional="true">
+                </param>
+            </when>
+            <when value="false">
+                <param name="content_id" type="hidden" value="">
+                </param>
+            </when>
+        </conditional>
+    </inputs>
+
+    <outputs>
+        <data format="tabular" name="display_py" label="display.py API">
+        <change_format>
+            <when input="add_path.out_format" value="html" format="html" />
+            <when input="add_path.out_format" value="txt" format="txt" />
+            <when input="add_path.out_format" value="tsv" format="tabular" />
+        </change_format>
+    </data>
+    </outputs>
+
+
+    <help>
+
+        display.py key url
+         - key is the user's api key (see database. *Example : 8672ceeb5a3d5ac259fc7b0e741ecb9f* )
+         - url is a concatenated string which is http://your_galaxy_url/api/[histories|workflows|libraries]/*eventually_something_more_specific*
+
+----
+
+**Details**
+
+        This url string is created for you. All you have to do is to complete what you want and eventually the second part *eventually_something_more_specific*.
+
+The content type of what you need could be:
+         - histories
+         - workflows
+         - libraries
+
+(...) And eventuelly, something more specific in the last input text box, to retrieve less (but more precise) information about a [workflow|history|library]:
+
+         * 5e512af0e2dc10db
+         * 5e512af0e2dc10db/contents
+         * 5e512af0e2dc10db/contents/c4a2c33b2fb05347
+
+    </help>
+</tool>