comparison refinery_test_1-N.xml @ 1:b87749d7a24c draft default tip

planemo upload commit 4fb0a789956149e5a58f4e370d7fe14f4e8bcf79

1:b87749d7a24c

<?xml version='1.0' encoding='utf-8'?>

<tool id="refinery_test_1-N" name="Refinery test tool 1-N" version="0.1">
    <description>for testing Galaxy workflow execution from Refinery</description>
        <command>
            <![CDATA[ 	
                ## Run the splitter tool upon a single input producing N outputs based on how many concatenated files our input was created from.
                $__tool_directory__/refinery_file_splitter.py -i $input_file
            ]]>
        </command>  
    <inputs>
        <param name="input_file" format="txt" type="data" label="Input file"/>
    </inputs>
    <outputs>
        <data format="txt" name="report">
            <discover_datasets pattern="__designation_and_ext__" visible="true"/>
        </data>
    </outputs>
    <tests>
        <test>
            <param name="input_file" value="concat_output.txt"/>
            <discovered_dataset designation="Output file 1" ftype="txt">
                <assert_contents>
                    <has_line line="Contents of File 1:"/>
                </assert_contents>
            </discovered_dataset>
            <discovered_dataset designation="Output file 2" ftype="txt">
                <assert_contents>
                    <has_line line="Contents of File 2:"/>
                </assert_contents>
            </discovered_dataset>
            <discovered_dataset designation="Output file 3" ftype="txt">
                <assert_contents>
                    <has_line line="Contents of File 3:"/>
                </assert_contents>
            </discovered_dataset>
        </test>
    </tests>
    <help>
        .. class:: infomark

        **Purpose**

        To test Galaxy workflow execution and monitoring from Refinery.

        -----

        .. class:: infomark

        **Inputs and outputs**

        This wrapper will accept one input file with the concatenated data of N input files run through refinery test tools and will partition said data into N output files containing the afforementioned N input files original contents
    </help>	
</tool>