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author refinery-platform
date Thu, 22 Feb 2018 14:14:03 -0500
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1 <?xml version='1.0' encoding='utf-8'?>
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3 <tool id="refinery_test_1-N" name="Refinery test tool 1-N" version="0.1">
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4 <description>for testing Galaxy workflow execution from Refinery</description>
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5 <command>
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6 <![CDATA[
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7 ## Run the splitter tool upon a single input producing N outputs based on how many concatenated files our input was created from.
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8 $__tool_directory__/refinery_file_splitter.py -i $input_file
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9 ]]>
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10 </command>
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11 <inputs>
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12 <param name="input_file" format="txt" type="data" label="Input file"/>
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13 </inputs>
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14 <outputs>
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15 <data format="txt" name="report">
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16 <discover_datasets pattern="__designation_and_ext__" visible="true"/>
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17 </data>
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18 </outputs>
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19 <tests>
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20 <test>
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21 <param name="input_file" value="concat_output.txt"/>
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22 <discovered_dataset designation="Output file 1" ftype="txt">
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23 <assert_contents>
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24 <has_line line="Contents of File 1:"/>
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25 </assert_contents>
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26 </discovered_dataset>
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27 <discovered_dataset designation="Output file 2" ftype="txt">
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28 <assert_contents>
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29 <has_line line="Contents of File 2:"/>
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30 </assert_contents>
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31 </discovered_dataset>
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32 <discovered_dataset designation="Output file 3" ftype="txt">
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33 <assert_contents>
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34 <has_line line="Contents of File 3:"/>
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35 </assert_contents>
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36 </discovered_dataset>
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37 </test>
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38 </tests>
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39 <help>
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40 .. class:: infomark
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41
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42 **Purpose**
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43
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44 To test Galaxy workflow execution and monitoring from Refinery.
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45
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46 -----
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47
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48 .. class:: infomark
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49
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50 **Inputs and outputs**
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51
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52 This wrapper will accept one input file with the concatenated data of N input files run through refinery test tools and will partition said data into N output files containing the afforementioned N input files original contents
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53 </help>
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54 </tool>