Mercurial > repos > refinery-platform > picard_merge_sam_files

diff picard_MergeSamFiles.xml @ 8:afcccc536c1d draft default tip

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planemo upload for repository https://github.com/scottx611x/picard_MergeSamFiles commit 18b5e06ecfca32bbeed3306c4576ddb500d71cc1
author refinery-platform
date Mon, 24 Sep 2018 10:51:56 -0400
parents 28f273969b5e
children
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--- a/picard_MergeSamFiles.xml	Mon Dec 04 10:52:59 2017 -0500
+++ b/picard_MergeSamFiles.xml	Mon Sep 24 10:51:56 2018 -0400
@@ -1,17 +1,14 @@
 <tool name="MergeSamFiles" id="picard_MergeSamFiles" version="@TOOL_VERSION@.0">
   <description>merges multiple SAM/BAM datasets into one</description>
-  <requirements>
-    <requirement type="package" version="1.126.0">picard</requirement>
-  </requirements>
-  
   <macros>
     <import>picard_macros.xml</import>
   </macros>
+  <expand macro="requirements" />
   <command detect_errors="exit_code"><![CDATA[
     @java_options@
     #for $index, $listCollection in enumerate($inputList):
       && 
-      java -jar \$JAVA_JAR_PATH/picard.jar 
+      picard
       MergeSamFiles
 
       #for $element in $listCollection: