comparison picard_MergeSamFiles.xml @ 8:afcccc536c1d draft default tip

planemo upload for repository https://github.com/scottx611x/picard_MergeSamFiles commit 18b5e06ecfca32bbeed3306c4576ddb500d71cc1

7:28f273969b5e

<tool name="MergeSamFiles" id="picard_MergeSamFiles" version="@TOOL_VERSION@.0">
  <description>merges multiple SAM/BAM datasets into one</description>
  <requirements>
    <requirement type="package" version="1.126.0">picard</requirement>
  </requirements>
  
  <macros>
    <import>picard_macros.xml</import>
  </macros>
  <command detect_errors="exit_code"><![CDATA[
    @java_options@
    #for $index, $listCollection in enumerate($inputList):
      && 
      java -jar \$JAVA_JAR_PATH/picard.jar 
      MergeSamFiles

      #for $element in $listCollection:
        INPUT="${element}"
      #end for

8:afcccc536c1d

<tool name="MergeSamFiles" id="picard_MergeSamFiles" version="@TOOL_VERSION@.0">
  <description>merges multiple SAM/BAM datasets into one</description>
  <macros>
    <import>picard_macros.xml</import>
  </macros>
  <expand macro="requirements" />
  <command detect_errors="exit_code"><![CDATA[
    @java_options@
    #for $index, $listCollection in enumerate($inputList):
      && 
      picard
      MergeSamFiles

      #for $element in $listCollection:
        INPUT="${element}"
      #end for