Mercurial > repos > recetox > recetox_aplcms_adjust_time

comparison recetox_aplcms_adjust_time.xml @ 1:d52c3e7c37b9 draft default tip

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planemo upload for repository https://github.com/RECETOX/galaxytools/tree/master/tools/recetox_aplcms commit 699355cdf45b2157e9eea3962a01950d469fb0ba
author recetox
date Thu, 16 Jun 2022 10:21:39 +0000
parents 5c7f041a5cf9
children
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0:5c7f041a5cf9 1:d52c3e7c37b9
1 <tool id="recetox_aplcms_adjust_time" name="RECETOX apLCMS - adjust time" version="@TOOL_VERSION@+galaxy0"> 1 <tool id="recetox_aplcms_adjust_time" name="RECETOX apLCMS - adjust time" version="@TOOL_VERSION@+galaxy1">
2 <description>corrects the retention time of features from LC/MS spectra</description> 2 <description>corrects the retention time of features from LC/MS spectra</description>
3 <macros> 3 <macros>
4 <import>macros.xml</import> 4 <import>macros.xml</import>
5 <import>macros_split.xml</import> 5 <import>macros_split.xml</import>
6 </macros> 6 </macros>
37 save_data_as_parquet_files(corrected, "corrected") 37 save_data_as_parquet_files(corrected, "corrected")
38 ]]></configfile> 38 ]]></configfile>
39 </configfiles> 39 </configfiles>
40 40
41 <inputs> 41 <inputs>
42 <param name="files" type="data" format="parquet" multiple="true" min="2" label="Input data" 42 <param name="files" type="data_collection" collection_type="list" format="parquet" label="Input data"
43 help="Mass spectrometry sample-wise feature tables." /> 43 help="Mass spectrometry sample-wise feature tables collection." />
44 <expand macro="mz_tol_macro"/> 44 <expand macro="mz_tol_macro"/>
45 <expand macro="peak_alignment"/> 45 <expand macro="peak_alignment"/>
46 </inputs> 46 </inputs>
47 47
48 <outputs> 48 <outputs>
52 </collection> 52 </collection>
53 </outputs> 53 </outputs>
54 54
55 <tests> 55 <tests>
56 <test> 56 <test>
57 <param name="files" ftype="parquet" 57 <param name="files">
58 value="extracted_expected/extracted_0.parquet,extracted_expected/extracted_1.parquet,extracted_expected/extracted_2.parquet"/> 58 <collection type="list">
59 <element name="extracted_features_0.parquet" value="extracted_expected/extracted_0.parquet"/>
60 <element name="extracted_features_1.parquet" value="extracted_expected/extracted_1.parquet"/>
61 <element name="extracted_features_2.parquet" value="extracted_expected/extracted_2.parquet"/>
62 </collection>
63 </param>
59 <output_collection name="corrected_feature_tables" type="list"> 64 <output_collection name="corrected_feature_tables" type="list">
60 <element name="corrected_features_0.parquet" file="corrected_expected/corrected_0.parquet" ftype="parquet"/> 65 <element name="corrected_features_0.parquet" file="corrected_expected/corrected_0.parquet" ftype="parquet"/>
61 <element name="corrected_features_1.parquet" file="corrected_expected/corrected_1.parquet" ftype="parquet"/> 66 <element name="corrected_features_1.parquet" file="corrected_expected/corrected_1.parquet" ftype="parquet"/>
62 <element name="corrected_features_2.parquet" file="corrected_expected/corrected_2.parquet" ftype="parquet"/> 67 <element name="corrected_features_2.parquet" file="corrected_expected/corrected_2.parquet" ftype="parquet"/>
63 </output_collection> 68 </output_collection>