diff fa_gc_content/setup.pl @ 0:8ed4fe2456f0 draft default tip

Uploaded
author qtrinh
date Fri, 09 Nov 2012 12:00:28 -0500
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/fa_gc_content/setup.pl	Fri Nov 09 12:00:28 2012 -0500
@@ -0,0 +1,21 @@
+#!/usr/bin/perl -w
+
+# make a backup 
+my $TOOL_XML="/mnt/galaxyTools/galaxy-central/tool_conf.xml";
+print "\nmaking backup of $TOOL_XML ...";
+system ("sudo cp  $TOOL_XML  $TOOL_XML.bak") || die ;
+system ("sudo cp  tool_conf.xml  /mnt/galaxyTools/galaxy-central/") || die ;
+
+my $DIR="/mnt/galaxyTools/galaxy-central/tools/qtrinh";
+if (! -e $DIR) {
+	system ("sudo mkdir $DIR") || die ;
+}
+
+system ("sudo cp  gc_content.xml gc_content.pl $DIR") || die ;
+
+system ("sudo chown -R galaxy:galaxy $DIR") || die ;
+system ("sudo chmod -R a+rx  $DIR") || die ;
+
+print "\n\ndone setting up ... please restart Galaxy ...\n\n";
+
+