# HG changeset patch
# User public-health-bioinformatics
# Date 1646939645 0
# Node ID b86961fa4ac4d335587043d424199fd5eefbb4e8
# Parent  e342bf27e717e919cc0be0952ce2d4cc7e022081
"planemo upload for repository https://github.com/public-health-bioinformatics/galaxy_tools/tree/master/tools/fastp_json_to_tabular commit 0cedf8014d943912974969f1ed294f6d0ec8f258"

diff -r e342bf27e717 -r b86961fa4ac4 fastp_json_to_tabular.py
--- a/fastp_json_to_tabular.py	Thu Mar 10 19:03:59 2022 +0000
+++ b/fastp_json_to_tabular.py	Thu Mar 10 19:14:05 2022 +0000
@@ -10,8 +10,8 @@
     reads_single_paired = fastp_report['summary']['sequencing'].split(' ')[0]
 
     if reads_single_paired == 'paired':
-        total_read_pairs_before_filtering = str(int(fastp_report['summary']['before_filtering']['total_reads']) / 2)
-        total_read_pairs_after_filtering = str(int(fastp_report['summary']['after_filtering']['total_reads']) / 2)
+        total_read_pairs_before_filtering = str(int(int(fastp_report['summary']['before_filtering']['total_reads']) / 2))
+        total_read_pairs_after_filtering = str(int(int(fastp_report['summary']['after_filtering']['total_reads']) / 2))
         read2_mean_length_before_filtering = fastp_report['summary']['before_filtering']['read2_mean_length']
         read2_mean_length_after_filtering = fastp_report['summary']['after_filtering']['read2_mean_length']
     else:
diff -r e342bf27e717 -r b86961fa4ac4 test-data/test-02_fastp.tsv
--- a/test-data/test-02_fastp.tsv	Thu Mar 10 19:03:59 2022 +0000
+++ b/test-data/test-02_fastp.tsv	Thu Mar 10 19:14:05 2022 +0000
@@ -1,2 +1,2 @@
 total_reads_before_filtering	total_read_pairs_before_filtering	total_reads_after_filtering	total_read_pairs_after_filtering	total_bases_before_filtering	total_bases_after_filtering	read1_mean_length_before_filtering	read1_mean_length_after_filtering	read2_mean_length_before_filtering	read2_mean_length_after_filtering	q20_bases_before_filtering	q20_bases_after_filtering	q20_rate_before_filtering	q20_rate_after_filtering	q30_bases_before_filtering	q30_bases_after_filtering	q30_rate_before_filtering	q30_rate_after_filtering	gc_content_before_filtering	gc_content_after_filtering	adapter_trimmed_reads	adapter_trimmed_bases
-2489208	1244604.0	2489208	1244604.0	538461532	538461532	212	212	220	220	486388202	486388202	0.903292	0.903292	439107721	439107721	0.815486	0.815486	0.512001	0.512001	0	0
+2489208	1244604	2489208	1244604	538461532	538461532	212	212	220	220	486388202	486388202	0.903292	0.903292	439107721	439107721	0.815486	0.815486	0.512001	0.512001	0	0