Mercurial > repos > public-health-bioinformatics > change_fasta_deflines
view change_fasta_deflines.xml @ 2:314c7fb4a463 draft
planemo upload for repository https://github.com/Public-Health-Bioinformatics/flu_classification_suite commit e6d31e4b3666b5e1d322e22f44526f23c66692fb
author | public-health-bioinformatics |
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date | Thu, 17 Jan 2019 19:09:57 -0500 |
parents | ba7cee75eb68 |
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<tool id="change_fasta_deflines" name="Change Fasta Deflines" version="0.0.1"> <requirements> <requirement type="package" version="1.70">biopython</requirement> </requirements> <command detect_errors="exit_code"><![CDATA[ python $__tool_directory__/change_fasta_deflines.py '$key_value_pairs' '$input_fasta' '$output_file' #if $tab_delim -t #end if ]]></command> <inputs> <param name="input_fasta" format="fasta" type="data" /> <param name="tab_delim" type="boolean" label="Names file is tab-delimited." checked="false" /> <param name="key_value_pairs" format="csv" type="data" /> </inputs> <outputs> <data name="output_file" format="fasta"/> </outputs> <tests> <test> <param name="input_fasta" value="fasta_2_rename.fasta" /> <param name="key_value_pairs" value="csv_rename_file.csv" /> <output name="output_file" value="output.fasta" /> </test> <test> <param name="input_fasta" value="fasta_2_rename.fasta" /> <param name="key_value_pairs" value="tab_delim_rename_file.txt" /> <param name="tab_delim" value="true" /> <output name="output_file" value="output.fasta" /> </test> </tests> <help><![CDATA[ ]]></help> <citations> </citations> </tool>