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view tools/assign_clades/assign_clades.xml @ 1:1dc65ec11a40 draft

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planemo upload for repository https://github.com/Public-Health-Bioinformatics/flu_classification_suite commit 856d0b7ab7dc801c168fcdf45cfd2e31f062a37e-dirty
author public-health-bioinformatics
date Wed, 09 Jan 2019 15:33:32 -0500
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<tool id="assign_clades" name="Assign Clades" version="0.0.1">
  <requirements>
    <requirement type="package" version="1.70">biopython</requirement>
  </requirements>
  <command detect_errors="exit_code"><![CDATA[
    assign_clades.py
    '$input_fasta'
    '$clade_definitions'
    '$output_file'
  ]]></command>
  <inputs>
    <param name="input_fasta" format="fasta" type="data" />
    <param name="clade_definitions" format="csv" type="data" />
  </inputs>
  <outputs>
    <data name="output_file" format="fasta"/>
  </outputs>
  <tests>
    <test>
      <param name="input_fasta" value="input_fasta.fasta" />
      <param name="clade_definitions" value="clades.csv" />
      <output name="output_file" value="output.fasta" />
    </test>
  </tests>
  <help><![CDATA[
  ]]></help>
  <citations>
  </citations>
</tool>