Mercurial > repos > public-health-bioinformatics > assign_clades
view tools/aggregate_linelisting/test-data/fluA_H3_clade_assigned_antigenic_sites_extracted.fasta @ 1:1dc65ec11a40 draft
planemo upload for repository https://github.com/Public-Health-Bioinformatics/flu_classification_suite commit 856d0b7ab7dc801c168fcdf45cfd2e31f062a37e-dirty
author | public-health-bioinformatics |
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date | Wed, 09 Jan 2019 15:33:32 -0500 |
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>A-ON-314-2017_3C.3a QNSSIEIDSQLENIQGQNKKLFVNKYNVPRTNNSNAGVTQNTSSIGSKSSRNTHLNSKAL NTMNNEQFDKLIVGTDKDISLAQSRTKRSAVIPNIGSIPSRIKGILNSTIRSSPGKKSEF VRIACRYVKQS >A-AB-399-2017_3C.2a_+_N31S_+_D53N_+_R142G_+_S144R_+_N171K_+_I192T_+_Q197H QNSSIEINSQLENIQGQNKKLFVSKYNVPRTNNSNTGVTQNTSAIGSRSSRNTHLNYTAL NTMNKEQFDKLIVGTDKDTFLAHSRTKRSAVIPNIGSIPSRIKGLLNSTIRSSPGKKSEF VRIACRYVKHS >A-QC-303-2017_3C.2a_+_N31S_+_D53N_+_R142G_+_S144R_+_N171K_+_I192T_+_Q197H QNSSIEINSQLENIQGQNKKLFVSKYNVPRTNNSNTGVTQNTSAIGSRSSRNTHLNYTAL NTMNKEQFDKLIVGTDKDTFLAHSRTKRSAVIPNIGSIPSRIKGLLNSTIRSSPGKKSEF VRIACRYVKHS >A-AB-319-2017_3C.2a_+_N31S_+_D53N_+_R142G_+_S144R_+_N171K_+_I192T_+_Q197H QNSSIEINSQLENIQGQNKKLFVSKYNVPRTNNSNTGVTQNTSAIGSRSSRNTHLNYTAL NTMNKEQFDKLIVGTDKDTFLAHSRTKRSAVIPNIGSIPSRIKGLLNSTIRSSPGKKSEF VRIACRYVKHS >A-AB-308-2017_3C.2a1_+_N121K_+_T135K QNSSIEIDSQLENIQDQNKKLFVSKHNVPRTKDSNTGVTQNKSAIRSSSSRNTHLNYTAL NTMNKEQFDKLIIGTDKDIFLAQSRTKRSAVIPNIGSIPSRIKGILNSTIRSSPGKKSEF VRIACRYVKHS >A-AB-341-2017_3C.2a1_+_N121K_+_T135K QNSSIEIDSQLENIQDQNKKLFVSKHNVPRTKDSNTGVTQNKSAIRSSSSRNTHLNYTAL NTMNKEQFDKLIIGTDKDIFLAQSRTKRSAVIPNIGSIPSRIKGILNSTIRSSPGKKSEF VRIACRYVKHS >A-BC-024-2018_3C.2a1_+_N121K_+_T135K QNSSIEIDSQLENIQDQNKKLFVSKHNVPRTKNSNTGVTQNKSAIRSSSSRNTHLNYTAL NTMNKEQFDKLIIGTDKDIFLAQSRTKRSAVIPNIGSIPSRIKGILNSTIRSSPGKKSEF VRIACRYVKHS >A-QC-309-2017_3C.2a1_+_N121K_+_K92R_+_H311Q QNSSIEIDSQLGNIQDQNKKLFVSRYNVPRTKDSNTGVTQNKSAIGSSSSRNTHLNYTAL NTMNKEQFDKLIVGTDKDIFLAQSRTKRSAVIPNIGSIPSRIKGILNSTIRSSPGKKSEF VRIACRYVKQS >A-BC-324-2017_3C.2a1_+_N121K_+_K92R_+_H311Q QNSSMEIDSQLGNIQGQNKKLFVSRYNVPRTKNSNTGVTQNKSAIGSSSSRNTHLNYTAL NTMNKEQFDKLIVGTDKDIFLAQSRTKRSAVIPNIGSIPSRIKGILNSTIRSSPGKKSEF VRIACRYVKQS >A-QC-315-2017_3C.2a1_+_N121K_+_K92R_+_H311Q QNSSIEIDSQLGNIQGQNKKLFVSRYNVPRTKNSNAGVTQNKSAIGSSSSRNTHLNYTAL NTMNKEQFDKLIVGTDKDIFLAQSRTKRSAVIPNIGSIPSRIKGILNSTIRSSPGKKSEF VRIACRYVKQS >A-ON-016-2018_3C.2a_+_N121K_+_S144K QNSSIEIDSQLENIQGQNKKLFVSKYNVPRTKNSNTGVTQNKSAIRSKSSKNTHLNYTAL NTMNNEQFDKLIVGTDKDIFLAQSRTKRSAVIPNIGSIPSRIKGILNSTIQSSPGKKSEF VRIACRYVKHS >A-BC-325-2017_3C.2a_+_N121K_+_S144K QNSSIEIDSQLENIQGQNKKLFVSKYNVPRTKNSNTGVTQNKSAIRSKSSKNTHLNYTAL NTMNNEQFDKLIVGTDKDIFLAQSRTKRSAVIPNIGSIPSRIKGILNSTIQSSPGKKSEF VRIACRYVKHS >A-ON-003-2018_3C.2a_+_N121K_+_S144K QNSSIEIDSQLENIQGQNKKLFVSKYNVPRTKNSNTGVTQNKSAIRSKSSKNTHLNYTAL NTMNNEQFDKLIVGTDKDIFLAQSRTKRSAVIPNIGSIPSRIKGILNSTIQSSPGKKSEF VRIACRYVKHS >A-ON-309-2017_No_Match QNSSIEIDSQLENIQGQNKKLFVSKYNVPRTNNSNTGVKQNTSAIKSSSSRNTHLNYKAL NTMNNEQFDKLIVGTDKDIFLAQSKTKISAVIPNIGSIPSRIKGILNSTIQSSPGKKSEF VRIACRYVKHS >A-BC-330-2017_No_Match QNSSIEIDSQLENIQGQNKKLFVSKYNVPRTNNSNTGVKQNTSAIKSRSSRNTHLNYTAL NTMNNEQFDKLIVGTDKDIFLAQSRTKRSAVIPNIGSIPSRIKGILNSTIQSSPGKKSEF VRIACRYVKHS >A-AB-415-2017_3C.2a_+_T131K_+_R142K_+_R261Q QNSSIEIDSQLENIQGQNKKLFVSRYNVPRTNNSNTGVKQNTSAIKSSSSRNTHLNYTAL NTMNNEQFDKLIVGTDKDIFLAQSRTKRSAVIPNIGFIPSRIKGILNSTIQSSPGKKSEF VRIACRYVKHS >A-AB-400-2017_3C.2a_+_T131K_+_R142K_+_R261Q QNSSIEIDSQLENIQGQNKKLFVSRYNVPRTNNSNTGVKQNTSAIKSSSSRNTHLNYTAL NTMNNEQFDKLIVGTDKDIFLAQSRTKRSAVIPNIGSIPSRIKGILNSTIQSSPGKKSEF VRIACRYVKHS >A-AB-416-2017_3C.2a_+_T131K_+_R142K_+_R261Q QNSSIEIDSQLENIQGQNKKLFVSRYNVPRTNNSNTGVKQNTSAIKSSSSRNTHLNYTAL NTMNNEQFDKLIVGTDKDIFLAQSRTKRSAVIPNIGSIPSRIKGILNSTIQSSPGKKSEF VRIACRYVKHS >A-QC-316-2017_3C.2a_+_T131K_+_R142K_+_R261Q QNSSIEIDSQLENIQGQNKKLFVSRYNVPRTNNSNTGVKQNTSAIKSSSSRNTHLNYTAL NTMNNEQFDKLIVGTDKDIFLAQSRTKRSAVIPNIGSIPSRIKGILNSTIQSSPGKKSEF VRIACRYVKHS