Mercurial > repos > public-health-bioinformatics > antigenic_site_extraction
view antigenic_site_extraction.xml @ 2:f879bf22aa12 draft
planemo upload for repository https://github.com/Public-Health-Bioinformatics/flu_classification_suite commit e6d31e4b3666b5e1d322e22f44526f23c66692fb
author | public-health-bioinformatics |
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date | Thu, 17 Jan 2019 19:08:56 -0500 |
parents | d3414e1396c4 |
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<tool id="antigenic_site_extraction" name="Antigenic Site Extraction" version="0.0.1"> <requirements> <requirement type="package" version="1.70">biopython</requirement> </requirements> <command detect_errors="exit_code"><![CDATA[ python $__tool_directory__/antigenic_site_extraction.py '$input_fasta' '$index_array' '$output_file' #if $csv -c #end if ]]></command> <inputs> <param name="input_fasta" format="fasta" type="data" /> <param name="index_array" format="csv" type="data" /> <param name="csv" type="boolean" label="Output to csv ?" /> </inputs> <outputs> <data format="fasta" name="output_file"> <change_format> <when input="csv" value="true" format="csv" /> </change_format> </data> </outputs> <tests> <test> <param name="input_fasta" value="14_H3_aa_seqs_aligned.fasta" /> <param name="index_array" value="FluA_H3_antigenic_aa_indices.csv" /> <output name="output_file" value="output.fasta" /> </test> </tests> <help><![CDATA[ Upload a fasta file containing full length flu sequences and an index array csv file. ]]></help> <citations> </citations> </tool>