Mercurial > repos > pjbriggs > weeder2

diff weeder2_wrapper.xml @ 1:79f075dc6cfb draft default tip

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Uploaded version 2.0.3.
author pjbriggs
date Wed, 26 Sep 2018 06:39:27 -0400
parents fb7e680232af
children
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--- a/weeder2_wrapper.xml	Mon Mar 05 06:21:11 2018 -0500
+++ b/weeder2_wrapper.xml	Wed Sep 26 06:39:27 2018 -0400
@@ -1,13 +1,9 @@
-<tool id="motiffinding_weeder2" name="Weeder2" version="2.0.2">
+<tool id="motiffinding_weeder2" name="Weeder2" version="2.0.3">
   <description>Motif discovery in sequences from coregulated genes of a single species</description>
-  <macros>
-    <import>weeder2_macros.xml</import>
-  </macros>
   <requirements>
     <requirement type="package" version="2.0">weeder</requirement>
   </requirements>
-  <command><![CDATA[
-  @CONDA_WEEDER2_FREQFILES_PATH@ &&
+  <command detect_errors="exit_code"><![CDATA[
   bash $__tool_directory__/weeder2_wrapper.sh
   $sequence_file $species_code ${species_code.fields.path}
   $output_motifs_file $output_matrix_file